Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01508 ATGGTTTTTCCAAAACCACCTTCCGAGTCTGATCTCTTTCTTCACTCTAATTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCTAGGTTCAGCATGCCGGAGAACTCGATGCCAAAGGAAGCTGCATACCAGAACATACACGATGAGCTGCAGCTTGATGCGAATCCAAAGCTGAACTTGGCTTCCTTTGTGACCACATCCATGGAAGAAGAATGCGACAAGCTTATCATGGAATCCATCAACAAGAACTATGTCGATATGGACGAGTACCCTGTTACCACTGATCTTCACAACCGGTGCGTTAACATGATAGCGCGTTTGTTCAACGCTGAAATTGGAGAAAATGAGACTGCAATTGGAGCAGGAACTGTTGGATCATCTGAGGCCATAATGCTGGCAGGCCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCTGAGGGCAAGCCCTATGATAAGCCCAACATGGTCACTGGTGCCAATGTGCAGGTATGTTGGGAGAAATTTGCGAGGTATTTTGAGGTGGAGTTGAGGGAAGTGAAGGTGAGAGAAGGCTACTACGTGATGGACCCTGCCAAAGCCGTTGAGCTGGTAGACGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCGACCTATAATGGGGAATTCGAAGATGTCAAGCTCTTAAATGACCTGCTGCTAGAAAAAAACAAGCAAACTGGATGGGATACGCCTATTCATGTTGATGCTGCTAGTGGAGGCTTTATTGCTCCTTTCCTTTATCCAGAACTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTACGGGCTTGTTTATGCTGGAATTGGTTGGGTCATATGGAGGTCCAAGGAAGACTTACCCGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTTAATTTTTCTAAAGGCTCTAGTCAGATCATTGCTCAATATTATCAGTTAATTCGTCTAGGTCAAGAGGGGTACCGGAGTATAATGGAGAACTGCAGAGAAAATGCTATGGTACTGAAGGAACGGTTGGAGGAAACCGGATGTTTTAACATACTGTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTTTGAAAGACAAAAGCCAATATGATGAGTTCAAGATATCAAGAATGTTGCGGCGCCATGGTTGGATTGTGCCAGCTTATCCTATGCCACCTGGTGCTCAGCACATCAATGTACTCCGTGTGGTTGTCAGGGCTGAGTTTTCACGCACTCTTGCTGAACGCCTTGTACTTGACATAAAAAATGCTCTGCATGAGCTTCAAAATCTTCACCCTAAGAACACAGCCAAAAAGGAAGGGAAGGCCTTGGTTGACACTAGTGAGGTCAAGAAGACTGCATTGGATGCGCACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAAAAAATCATGGCTGCCTAG 1476 0.4553 MVFPKPPSESDLFLHSNFASRYARDSLPRFSMPENSMPKEAAYQNIHDELQLDANPKLNLASFVTTSMEEECDKLIMESINKNYVDMDEYPVTTDLHNRCVNMIARLFNAEIGENETAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNMVTGANVQVCWEKFARYFEVELREVKVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKERLEETGCFNILSKDNGVPVVAFSLKDKSQYDEFKISRMLRRHGWIVPAYPMPPGAQHINVLRVVVRAEFSRTLAERLVLDIKNALHELQNLHPKNTAKKEGKALVDTSEVKKTALDAHREIIAQESNKRQKIMAA* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01508 491 Gene3D - 361 447 - -
Rops2g01508 491 FunFam Glutamate decarboxylase 361 448 - -
Rops2g01508 491 FunFam Glutamate decarboxylase 4 65 - -
Rops2g01508 491 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Rops2g01508 491 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Rops2g01508 491 PANTHER GLUTAMATE DECARBOXYLASE 9 484 IPR010107 GO:0004351|GO:0006536|GO:0030170
Rops2g01508 491 FunFam Glutamate decarboxylase 66 360 - -
Rops2g01508 491 CDD DOPA_deC_like 59 440 - -
Rops2g01508 491 Gene3D - 1 65 - -
Rops2g01508 491 Gene3D - 66 360 IPR015421 GO:0003824
Rops2g01508 491 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01508 Rops-Chr2 22284113 22286633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01508 1 479 Calmodulin-binding Proteins AT5G17330 77.160 0.0 781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01508 2 22284113 22286633 Rops2g01508 2 22284113 22286633 ECH