Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01824 ATGAACGCAGCCGTTTCCAGAAAAGACATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAGGACGAAGCTCTTCAGAAGCTCGTGGAGAAACATGGGCCCAGGAATTGGTCTTTGATTAGCAAGTCCATTCCTGGCAGGTCCGGCAAGTCTTGTAGGCTCCGGTGGTGCAATCAGCTCTCTCCCCAGGTGGAGCACAGAGCCTTCACTCCTGAAGAAGACGACACCATAATCAGAGCCCATGCTCGTTTCGGAAACAAATGGGCCACCATAGCACGCCTCCTCTCAGGGAGGACCGACAACGCCATCAAGAACCACTGGAACTCAACCTTGAAGCGCAAGTGCTCTTCCATCATGCTCGATGACCCTCAACCACTGAAAAGGTCAGTGAGTGCCGGTGCGGCTATGCCTGTCTCCACAGGGCTTTACATGAACCCTCCCACACCGGGTAGCCCCTCTGGATCCGATGTGAGCGAGTCCAGCGTACCAGTTGCATCCTCTTCACACGTCTACCGACCTGTGCCAAGGACTGGCGGGGTTCTACCACCCGTAGAAACGACGTCGTCTTCCAATGACCCTCCAACTTCATTATCCCTATCCCTTCCAGGCGTGGACTCTTCTTCTGAAGTGTCAAATCGCGTAACCGATCCAACCCCTGCCCCTCCTCCTCCGCCGCCGCCAGCAAATGCTATCCCTTTGATGCCGGTAATTGCGGCGCCGGTTCCCGTTGTTCATGATCCGTCGGCGGCGGTAGCGGCGAAGCAGAAGGGGTTGGGGATGCCGTTCAATTTCAGTGCAGAGTTGCTGGTGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCAACAGAATGGGATGTGTTTTCAGGCAGTGGCCGATGATGGGTTTAGGAATGCTTTTGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 948 0.5454 MNAAVSRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMLDDPQPLKRSVSAGAAMPVSTGLYMNPPTPGSPSGSDVSESSVPVASSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSSEVSNRVTDPTPAPPPPPPPANAIPLMPVIAAPVPVVHDPSAAVAAKQKGLGMPFNFSAELLVVMQEMIRKEVRSYMEQQNGMCFQAVADDGFRNAFVKRIGISRIDS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01824 315 MobiDBLite consensus disorder prediction 1 20 - -
Rops1g01824 315 FunFam MYB transcription factor 14 65 - -
Rops1g01824 315 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Rops1g01824 315 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Rops1g01824 315 MobiDBLite consensus disorder prediction 141 228 - -
Rops1g01824 315 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Rops1g01824 315 Gene3D - 67 129 - -
Rops1g01824 315 CDD SANT 68 111 IPR001005 -
Rops1g01824 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Rops1g01824 315 MobiDBLite consensus disorder prediction 144 167 - -
Rops1g01824 315 Gene3D - 13 65 - -
Rops1g01824 315 SMART sant 65 113 IPR001005 -
Rops1g01824 315 SMART sant 13 62 IPR001005 -
Rops1g01824 315 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops1g01824 315 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops1g01824 315 FunFam Transcription factor MYB44 68 114 - -
Rops1g01824 315 MobiDBLite consensus disorder prediction 182 215 - -
Rops1g01824 315 PANTHER MYB PROTEIN-RELATED 14 193 - -
Rops1g01824 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Rops1g01824 315 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01824 Rops-Chr1 37461089 37462581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01824 6 314 MYB Transcription Factor Family AT4G37260 51.765 9.87e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01824 Myb_DNA-bind_6 1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01824 1 37461089 37462581 Rops2g04486 2 82014954 82016213 ECH
Rops10g00999 10 21460005 21461312 Rops1g01824 1 37461089 37462581 ECH
Rops9g02179 9 39862056 39863217 Rops1g01824 1 37461089 37462581 ECH
Rops1g01824 1 37461089 37462581 Rops1g01824 1 37461089 37462581 ECH
Rops2g04486 2 82014954 82016213 Rops1g01824 1 37461089 37462581 PCT