Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01818 ATGGCTGAACAACACTCTCCTTCATTACTCTGTGAAGAACAACAAAATTTTAAGGAAGAAGAAGATTCTGGAGTCATAAAGCCTCCAACTTTACCTTCGATTTTGCTCGAGAAGGAACATGATGACCTTCTCTCTCTAATCTCCAAAGAAAGAGACACCCGTTTCTGTTCTGATATTGTAACTCTTCTTGAGGGTACTCGCCATGATGCTGTGCTCTGGATTTGTAGAGTTTCAACGCACTATGGTTTCACTGCTTTGACCACTGTTCTTGCCGTTAACTACTTTGATAGGTTCATAACGAGCCTACAGCTTCAGAGGGACAAGCCATGGATGACTCAGCTCACCGCAGTTGCTTGTTTATCTCTTGCTGCCAAAATTGAAGAGACCCAGGTGCCTCTGCTTTTGGAATTCCAAGTGGAGGAATCAAAATTTGTGTTTGAAGCAAAGACCATACAGAGAATGGAGCTCCTAGTTTTGTCCACTCTTCAATGGAGGATGAACCCTATCACCCCAATTTCCTTCTTTCAACACATTGTTAAAAGGCTTGGTTTCAAGAGTTGCTTACATTGGGAGTTTCTGTGTAGTTGTGAACAAGTTCTTCTATGTGTCATTGCGGATTTAAGGGTGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTATAATGATCCACGTTATTAAAGAAATTGAACCATTTAATGCACTGGAATACAGAAATAAACTTCTGGGTTTACTCAAAATTAGTGAGGAGCAAGTGAATGAGTGCTACAAACTCATGCTGAAACTATTAGTTTGCTATGAAGGCATTCACAACATTCACCAAAAACACAAACGTCTATCTGAACCAAGCAGCCCAGGTGGGGTCATTGATGCATCTTTCAGCTGTGACAGCACAAATTATTCAATGACTCTGGCATCAGCAGTCTCACTATCACCTGAGCCAGTGTTTAAGAGGAGCAAAGCTCAGTTCATTGATGTTCTAGACAGTCCTCGTTAA 996 0.4137 MAEQHSPSLLCEEQQNFKEEEDSGVIKPPTLPSILLEKEHDDLLSLISKERDTRFCSDIVTLLEGTRHDAVLWICRVSTHYGFTALTTVLAVNYFDRFITSLQLQRDKPWMTQLTAVACLSLAAKIEETQVPLLLEFQVEESKFVFEAKTIQRMELLVLSTLQWRMNPITPISFFQHIVKRLGFKSCLHWEFLCSCEQVLLCVIADLRVMSYLPSTLAAAIMIHVIKEIEPFNALEYRNKLLGLLKISEEQVNECYKLMLKLLVCYEGIHNIHQKHKRLSEPSSPGGVIDASFSCDSTNYSMTLASAVSLSPEPVFKRSKAQFIDVLDSPR* 332
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01818 331 SUPERFAMILY Cyclin-like 151 277 IPR036915 -
Rops1g01818 331 CDD CYCLIN_AtCycD-like_rpt1 67 164 - -
Rops1g01818 331 FunFam CYCLIN D32 168 257 - -
Rops1g01818 331 Gene3D - 168 257 - -
Rops1g01818 331 SMART cyclin_7 72 160 IPR013763 -
Rops1g01818 331 PANTHER CYCLINS 40 270 IPR039361 -
Rops1g01818 331 FunFam D6-type cyclin 54 167 - -
Rops1g01818 331 SUPERFAMILY Cyclin-like 38 167 IPR036915 -
Rops1g01818 331 SMART Cyclin_C_2 169 297 IPR004367 -
Rops1g01818 331 CDD CYCLIN_AtCycD-like_rpt2 169 259 - -
Rops1g01818 331 Pfam Cyclin, N-terminal domain 64 167 IPR006671 -
Rops1g01818 331 Gene3D - 62 167 - -
Rops1g01818 331 Pfam Cyclin, C-terminal domain 169 276 IPR004367 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops1g01818 Rops-Chr1 37415035 37416545 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01818 8 322 Core Cell Cycle Gene Families AT5G67260 48.521 1.57e-97 292
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01818 1 37415035 37416545 Rops2g04491 2 82095073 82096888 ECH
Rops10g01122 10 23274087 23276015 Rops1g01818 1 37415035 37416545 ECH
Rops9g02182 9 39938520 39940150 Rops1g01818 1 37415035 37416545 ECH
Rops1g01818 1 37415035 37416545 Rops1g01818 1 37415035 37416545 ECH
Rops1g01818 1 37415035 37416545 Rops6g03152 6 55006850 55008410 PCT
Rops2g04491 2 82095073 82096888 Rops1g01818 1 37415035 37416545 PCT