Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01604 ATGGCGGGTTTATTTTCATTAGGTGGTGGAGGGAGAGGGAACAACAGTGAAGAGGACCAACAACAACCAACGGAAATTCCTCCCCCGGAAAGCTTATTCTGGTATAACAAGAATGACGATGTGGTTTCCTCGTACCGAGGTTTTGAGCTATGGAACCAACAACAACAACAACAACAACTCATCCCTCAAGCCCAACCGCGGTCTCTATTTCAACAAGATCTTTACTCCTCGGCCGCGGCGTTAGGGGTGGGGCCCAGTAGACCCTCCGATGATCGGTCGTCGTCGAGATCCGGCGGAGGGATAAGCTGTCAGGACTGTGGGAACCAAGCGAAGAAGGATTGTCCTCACGTGAGGTGTAGGACTTGCTGTAAGAGCCGTGGCTTCGATTGTCAAACCCATGTAAAGAGCACTTGGGTTCCCGCTTCTAAGCGCCGTGAAAGACTACAACAACTCTCTGCTCTCCAACAACAACAACAGCTTCCACCAGAAGTTTCCAGAAGGCACAGAGATCATAACCCCACCTCTTCCTCCCTCGCCTGCACTCGTTTGCCTACAAATCCCTCACCCTCAGGGTTAGAGGAGGTGAATTTTCCTGCGGTGGTGAGTTCTCCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCCATGGATGAGGCGGAGGAGGAGTATGCTTACTCAACGGCTGTAAACATTGGAGGGCATGTGTTCAAAGGAATTCTGTATGATTATGGTCCAGATGGGAATAATGCGATGGGTGGTGGGAACAGCTCCTCCACCGGTGTTGGTGGTGAAGTTCAGCCCTTGAACCTCATTTCAGCTGCCCCCACCACTGCCGTTGGACCACTTGTTGATCCTTCTTCCTTGTACCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA 930 0.5183 MAGLFSLGGGGRGNNSEEDQQQPTEIPPPESLFWYNKNDDVVSSYRGFELWNQQQQQQQLIPQAQPRSLFQQDLYSSAAALGVGPSRPSDDRSSSRSGGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHVKSTWVPASKRRERLQQLSALQQQQQLPPEVSRRHRDHNPTSSSLACTRLPTNPSPSGLEEVNFPAVVSSPAEFRCVRVSSMDEAEEEYAYSTAVNIGGHVFKGILYDYGPDGNNAMGGGNSSSTGVGGEVQPLNLISAAPTTAVGPLVDPSSLYPAPLNTFMPGSGTQFFPHPRS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01604 309 MobiDBLite consensus disorder prediction 13 27 - -
Rops1g01604 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
Rops1g01604 309 MobiDBLite consensus disorder prediction 80 113 - -
Rops1g01604 309 Pfam Domain of unknown function (DUF702) 100 245 - -
Rops1g01604 309 NCBIfam putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Rops1g01604 309 MobiDBLite consensus disorder prediction 174 191 - -
Rops1g01604 309 MobiDBLite consensus disorder prediction 88 104 - -
Rops1g01604 309 MobiDBLite consensus disorder prediction 152 191 - -
Rops1g01604 309 MobiDBLite consensus disorder prediction 1 35 - -
Rops1g01604 309 NCBIfam LRP1 C-terminal domain 197 244 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01604 Rops-Chr1 34232711 34235045 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops1g01604 DUF702 1.5e-63 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02431 10 42540016 42541421 Rops1g01604 1 34232711 34235045 ECH
Rops3g00510 3 6493891 6495001 Rops1g01604 1 34232711 34235045 ECH
Rops1g01604 1 34232711 34235045 Rops1g01604 1 34232711 34235045 ECH
Rops10g02627 10 45509388 45510326 Rops1g01604 1 34232711 34235045 ECH