Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01177 ATGTCACCTGATGACACACCACCACCTGCAACAACGAAAGAACATGAAAACCAAGGTTCCGGTGGCCGGAAAACTGGCTCCACAAGGCCACAAGAGCAAGGTATGAAGTGTCCGAGATGTGATTCTCCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGAGCTTTACGCAATGTTCCCATAGGAGGTGGATGCAGGAAGAACAAGAAGGTGAAATCATCAAGGCTTTCATGTGATTCCAAGGACTCTGGTTCTTCTTCAGAGCTTGGTGGACTCAAGTTCCTTCATGGTCTTTCACCTCCTGTGGACTTTCACCTTGGTGGGTTACCCTTCCCTAGGCTTCATCATCACCCTCCAAACACTCCCATCTATAATAACCACTTCTCTTCTTTTGGTGACACTTCTGCTTCTGTCACAAGTGCTTCTTGTTTCAACCTTGACCCTCCTTCTGGTACCTCAAATTCTTTTGCTCCTTTGAATTACCCGTTTTCTTCTTCAACTGGAACCGGGTATAATGGTGCAATCCAAGGTAGCATGAGCTCTTTGAACGTTCATGGTAACCTTGCTTCTTCGATTGAGACTTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTAGCTATGCTCTTTGGTGGAGATAACCAGAAAGATAATAATAATAGTGTTTCAACTGTTAACCTTGAGAACCAGACCCAGAAACCACAACCCATTTTGTTTCAGAACCTTGAGCTTTCAAAGCCAGGGATTTTCTCCACCAGAAAAGAAGGCCCAAGTGGAGATACACCAACTGAATGGTTCTTTGGGAATTCTTATGCCTCTGTTACTCCTACACCAACTACAAGTGGTGGTGGTGGTGGCCCTGGTCATGATAATGCAAGCAATTGGGGTAATGGTGTTCATGCTTGGAGTGATGTGCAGCAGCAATATAGTGCTTTGCCCTAG 1014 0.4566 MSPDDTPPPATTKEHENQGSGGRKTGSTRPQEQGMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSELGGLKFLHGLSPPVDFHLGGLPFPRLHHHPPNTPIYNNHFSSFGDTSASVTSASCFNLDPPSGTSNSFAPLNYPFSSSTGTGYNGAIQGSMSSLNVHGNLASSIETLSSMNQDLHWKLQQQRLAMLFGGDNQKDNNNSVSTVNLENQTQKPQPILFQNLELSKPGIFSTRKEGPSGDTPTEWFFGNSYASVTPTPTTSGGGGGPGHDNASNWGNGVHAWSDVQQQYSALP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01177 337 MobiDBLite consensus disorder prediction 1 37 - -
Rops1g01177 337 MobiDBLite consensus disorder prediction 300 322 - -
Rops1g01177 337 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Rops1g01177 337 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Rops1g01177 337 MobiDBLite consensus disorder prediction 12 32 - -
Rops1g01177 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 231 IPR045174 GO:0003700|GO:0006355
Rops1g01177 337 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01177 Rops-Chr1 27432538 27434098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01177 6 337 C2C2-Dof Transcription Factor Family AT5G65590 41.714 4.19e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops1g01177 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01177 - - gmx:100780729 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01177 1 27432538 27434098 Rops2g02894 2 50803107 50804135 PCT