Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01164 ATGGAAGAGAGGAAGTTTGTGTGCAAGTATTGTAGCAAGAGGTTCCCTTGTGGGAAGTCTTTGGGTGGTCACATCAGGACCCATATGAGTGGACATTCAGTTCAAGCCAATGAAGAGAGAAGAAGTAATGCTGCTATGCTCAAGTTTGATGCTGGGAGGAAAAGGAAGAGGGATTTAGGGTCTGCTGCTGCTACTGGTGGTGATGATGGTGGTGGGAACCTCATCTATGGCCTTAGAGAGAACCCCAAGAAAACCAAAAGGTTTGTGCACTCCAATGCCACTGTGCAAATGGAGAAGTTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAAAGAAAAAGGAGCCAATAGGTTTGAAAACAATTCTGGGCTCAGTGAGAAGCAGAAAATGGTTATGGATAGTCAATCTGATACCGAGACTTCTGTTCCAACTCATTCAAGGAGATCAAAGAGAATGAGGTTCAACACCCTTAGTAACAACCATCCTCCATCTTCTTCTGTGTCTGAGGTTGAGCAGGAACAAGAAGAGGTTGCTAGGTGCTTGATGATGTTGTCCAAAGATTCTAGCTACAGGGGTCGTTTTGCTTTGGTGACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAAGCAAAATCACCTTCTGTTGATACCAAGGTTACTATGAATTATGGTAAGAACTATATGTCTAATGCTTATGAGCTTGTGGAGAAGAAGCTGCACAAGGACACAAAGTTGAAGTCTGCTGAGATTGGTTATGTTTCTGATAATTCTGATTCTGGGTACTTCAGATATGGTCCTAAAAAAATGGACTCAGATGATTCAAGTGATGGGTTTTTCAAGAATGAAGTTAAGTCTTCAAAAGTTGGATACATGTCTGGGTTTGAGGATTATGATGTTGAATCGAGGAAGATGCTGAGCAGAGGAAGAAGCAGGAACAGTGAATTTAAGAAACTAGCTTTGGAGGATTTGGACTATGATGGAGAAGATGGAGCTGTGAGGAAGTTTGATTCAAGGAAGAGGTCCAACTATGATTCTGTTGGTCACAATTTAGTTGGGGCTTCTAGCAGGAAGGTAGCAAATGGTTTTAGCACCAATGATGAAATCTATGAGCATGTTGGTAAAGGGTGGAAGTATGAGTGCTGGACCAGTGAAAGGGAAAATGTCTCTGATGATTCAGCTTATGAGAGTGATGAAAACAGCACAGACACTGATTCTTATCCTGCTCCAAAGCCTCAGAACAGTAGGAACCTCAATGGAAAGAAGTCCAGCAAGGGAAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGAACATGAGTGCCCAATATGCAACAAAATTTTCAGGTCAGGCCAAGCTTTGGGTGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAGAACACTTTGGTCATTAGACCAGGTGCTCCTGCTATTCCTTGCCTAATTGATCTTAATCTACCTGCTCCTGTTGATGAATAG 1518 0.4223 MEERKFVCKYCSKRFPCGKSLGGHIRTHMSGHSVQANEERRSNAAMLKFDAGRKRKRDLGSAAATGGDDGGGNLIYGLRENPKKTKRFVHSNATVQMEKFCKECGKGFPSLKALCGHMACHSEKEKGANRFENNSGLSEKQKMVMDSQSDTETSVPTHSRRSKRMRFNTLSNNHPPSSSVSEVEQEQEEVARCLMMLSKDSSYRGRFALVTESSDNNSVVLEAKSPSVDTKVTMNYGKNYMSNAYELVEKKLHKDTKLKSAEIGYVSDNSDSGYFRYGPKKMDSDDSSDGFFKNEVKSSKVGYMSGFEDYDVESRKMLSRGRSRNSEFKKLALEDLDYDGEDGAVRKFDSRKRSNYDSVGHNLVGASSRKVANGFSTNDEIYEHVGKGWKYECWTSERENVSDDSAYESDENSTDTDSYPAPKPQNSRNLNGKKSSKGKKKLKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAPAIPCLIDLNLPAPVDE* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01164 505 SMART c2h2final6 6 28 IPR013087 -
Rops1g01164 505 SMART c2h2final6 99 121 IPR013087 -
Rops1g01164 505 SMART c2h2final6 450 472 IPR013087 -
Rops1g01164 505 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Rops1g01164 505 MobiDBLite consensus disorder prediction 131 155 - -
Rops1g01164 505 Pfam C2H2-type zinc finger 101 123 - -
Rops1g01164 505 Pfam C2H2-type zinc finger 450 472 - -
Rops1g01164 505 Pfam C2H2-type zinc finger 6 30 - -
Rops1g01164 505 MobiDBLite consensus disorder prediction 402 449 - -
Rops1g01164 505 MobiDBLite consensus disorder prediction 131 161 - -
Rops1g01164 505 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Rops1g01164 505 SUPERFAMILY beta-beta-alpha zinc fingers 100 472 IPR036236 -
Rops1g01164 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Rops1g01164 505 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Rops1g01164 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Rops1g01164 505 Gene3D Classic Zinc Finger 1 61 - -
Rops1g01164 505 Gene3D Classic Zinc Finger 82 160 - -
Rops1g01164 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Rops1g01164 505 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 505 - -
Rops1g01164 505 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Rops1g01164 505 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01164 Rops-Chr1 27185998 27188599 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g01164 zf-C2H2_6 6e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01164 1 27185998 27188599 Rops1g01164 1 27185998 27188599 ECH