Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01099 ATGTCTGAGGTTATTAAGGACTCTGCCATAAAGCTGTTTGGTAGAACGATTTCTCTGCCACGCAACAACGAGGTCTCTGCCAATCATTCTTCTAAACCAGTTCATCATGATGATTGTCCTGATCATAGTCCTCCTTCATCTTTATCATCTCCACGTGAAGTGAGCACTGCAACAGAACATGAAGCAGAAAAGGACAATAAGGAACCATCAAAGAAAGAACTCACCTCAATACAAGATGATGAAGCCTCAAATCAAACCACAAAGGATCTAAAATCTCCCACATCTTCAAGCATTTTTGAGAACCCCAAGAGTCCCTCAGGTGAAAAAGTAACCTCTCAACTGAAATCCTCTAAAAATGGAGAACAAGGAGATGCAAGAGATACAAGTGTGTCACAAGACAAAACTCCAAAGAAACCAGACAAGATTCTTCCATGCCCAAGATGCAACAGCATGGACACAAAATTTTGTTACTACAACAACTACAATGTCAACCAACCACGTCACTTCTGCAAGAATTGCCAGAGATATTGGACTGCTGGAGGAACCATGAGAAATGTGCCAGTAGGTGCAGGTCGCCGCAAGAACAAAAGCTCTGCTTCTTCAGCTGCCTCACATTATCGTCAAATGATGGTTCCTGAGACCCTTCAAACAGCTAAACTCAATGCAGCCAATGGATTACACAGTGCTATCTTGACCTTTGGATCAGATTCTCCTCTCTGTGATTCCATGGCTTCTGTGTTGAACCTTGCAGAGAAAACATCACCAAATGGTGTTGTCTTAAATGGGTTTCATGCACCTAAGCAAAACATTTTTGTTTCTCATGGTAGAGAAGAGAATAACAATGGGGATGATGGCTCAGTTGGAGCTTCTGTTATGGCTTCAAATTCATCTACACATGAAGAAAAGTCAGTGGATAAGAGTTATCAAAGTTTGCCTCCTCCTCAATTTCCCTTCCAAGGTGGTTCTTCTTCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGACTCCAATTTCATATTGCCAACCAAGTTATCCTGTGTCATTCTATCCCACACCAGCATATTGGGGTGGTTGTTTGCCACCCTCATGGAGGGTACACCCTCTCTCTCCACAATCTTCTCTTAACCAATCTGCCACTAGTTTTGGTCCAAACTCACCTACTTTGGGGAAACATTCAAGGGATGGGGAAATCATCTTTCCATCAAACACAGAGAAAGAAAAGCCTAGCTCAGAAAATAACAGCACAGAAAATAGTTTGTTGATCCCAAAGACACTGAGAATTGATGACCCTACTGAAGCTGCGAAGAGTTCTATATGGTCAACACTAGGGATCAAGTATGAGAAGGGAAACAATTCTCTCAATGGTAGAGGCCTTTTCAAGGCTTTTGCATCTAAAGGTGATGACAAGAATCATGTGGTTGAAACATCCCCAGTGCTGCAAGCCAACCCTGCTGCTTTATCAAGGTCTCTTATATTCCATGAGAGAACCTGA 1494 0.425 MSEVIKDSAIKLFGRTISLPRNNEVSANHSSKPVHHDDCPDHSPPSSLSSPREVSTATEHEAEKDNKEPSKKELTSIQDDEASNQTTKDLKSPTSSSIFENPKSPSGEKVTSQLKSSKNGEQGDARDTSVSQDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASSAASHYRQMMVPETLQTAKLNAANGLHSAILTFGSDSPLCDSMASVLNLAEKTSPNGVVLNGFHAPKQNIFVSHGREENNNGDDGSVGASVMASNSSTHEEKSVDKSYQSLPPPQFPFQGGSSSSPWPYPWNPAMTPISYCQPSYPVSFYPTPAYWGGCLPPSWRVHPLSPQSSLNQSATSFGPNSPTLGKHSRDGEIIFPSNTEKEKPSSENNSTENSLLIPKTLRIDDPTEAAKSSIWSTLGIKYEKGNNSLNGRGLFKAFASKGDDKNHVVETSPVLQANPAALSRSLIFHERT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01099 497 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Rops1g01099 497 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Rops1g01099 497 MobiDBLite consensus disorder prediction 79 126 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 56 78 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 370 388 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 14 144 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 127 141 - -
Rops1g01099 497 Pfam Dof domain, zinc finger 140 197 IPR003851 GO:0003677|GO:0006355
Rops1g01099 497 PANTHER CYCLIC DOF FACTOR 2 1 497 IPR045174 GO:0003700|GO:0006355
Rops1g01099 497 MobiDBLite consensus disorder prediction 274 308 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 283 298 - -
Rops1g01099 497 MobiDBLite consensus disorder prediction 370 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01099 Rops-Chr1 25727039 25730594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01099 5 495 C2C2-Dof Transcription Factor Family AT5G39660 41.176 2.85e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops1g01099 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01099 - - lang:109358999 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01099 1 25727039 25730594 Rops1g01099 1 25727039 25730594 ECH
Rops1g01099 1 25727039 25730594 Rops2g03881 2 71182844 71186438 ECH