Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00554 ATGACGGACACCACTGACGATATAGCAGAAGAAATCTCCTTCCAGAGCTTCGACGATGACTGTAGAGTGCTCGGTAATCTTCTCAACGATGTTTTGCTGCGAGAGGTTGGCCCTGTCTTCGTTGAAAAATTCGAAAAAATTCGACTCCTTGCTCAGAGTGCTTGTAATATGAGACAGGCAGGGATTGAGGACATGGCAGAGCTGCTAGAGAAGCAATTGGCTTCAGATTTATCCAAGATGACATTAGAAGAAGCTCTGACCCTTGCTCGTGCTCTCAGCCATTATCTTACTCTGATAAGCATAGCTGAAACCCACCATAAGGTTCGTAATGGAGTAAATATAGCACATATTGCAAAATCTTGTGATGACATCTTTAACCAGCTGGTGCAAGGTGGAGTTTCCCCAGATGAGCTTTATAACACAGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACTGCTCATCCCACACAAATTAATCGCCGTACCTTGCAATACAAACACATTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTAATCTTAGCCCTGAAGATCGAGAAATGGTGATTGAAGACCTGGTGAGAGAGATAATTTCAATATGGCAGACAGATGAACTTAGGCGTCAGAAACCTACGCCAGTTGATGAAGCTAGAGCTGGATTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCGTTATTTACGTCGAGTCAGCAATGCTCTAAAGAAGCATACGGGAAAACCACTTCCATTGACTTGTACTCCCATAAAGTTTGGATCATGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACTGCAAAGGTCACAAGAGATGTTTCACTTTTGTCAAGATGGATGGCGATTGACCTTTATGTTCGGGAAGTGGATAGCCTGAGATTTGAGCTATCCATGAACCAGTGCTCTGATAAGTTGTCTAGTCTGGCACATGAAATTCTACAAGAAGCTAACCATGAGAATCATCGTGAGCATAGAAGTCAATTGAATCATCAAAATCAAGAAGCTTCATCACTTCAAAAATTACTTCCAGCTAGATTTCATTTACCCTCTCGTGATGAAAATGGGGAATCTGAGCATCCCAGACTCGACATCCCTGGACCTGACTACATTCAACTCAATGTCAAGGATGGTAAGATTTCAAGTTCAACTAAGAGCATTGGTGGAAGTTGCAATATTCATTCATCAGTAGCAAGTTCAGCAAAATCTAACGCTTCTTCATCAGTTGCAATTTCACGCTCTCCGTCTTTCAACTCTGGTCAACAGCTTCTTGCTCAGAGGAAATTGTATGCAGAGTCCCAAATAGGAAGATCCAGTTTTCAGAAGCTTTTGGATCCAGAGCACCATCAGCTTCCTGGAATTGCTCCTTATAGAGTTATCCTCAGGAATGTAAAAGATAAGCTTCTGAGAACTCGTAAACGGTTGGAGCTTCTTCTGGAGGATGGTCCTTGTGATCATGATCCTTTTGATTACTATGAAACAACTGATCAGCTTTTGGAACCTCTGCTTCTCTGTTATGAATCTCTGCAATCATGTGGATCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTGATTCGAAGAGTTGCTACCTTCGGCATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGCAGACATGCTGAAACAATTGATGCAATTACAAGGTATTTGGGTATGGGTACATACAGTGAATGGGATGAAGAAAAGAAACTTGACTTCTTAACCCGGGAATTGAAAGGGAAGAGGCCACTGGTTCCTCCTAGTATAGAGGTTTCTCCAGATGTAAAAGAAGTCTTGGATACATTCCGAACTGCTGCTGAGCTAGGGAGTGATGCACTTGGAGCCTATGTGATCTCTATGGCCTCAAATGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCACGGCTTGCTGTTAGTGGGGAGCTAGGAAGGGCATGTCCTGGTGGAACCCTGCGGGTGGTTCCTTTATTTGAAACTGTGAAGGACCTGAGAGTAGCTGGTTCAGTTATCAGAAAACTTTTATCAATAGATTGGTACCGCCAACACATAATTAAAAACCATAATGGGCAACAAGAGGTTATGGTTGGGTATTCTGATTCTGGTAAAGATGCTGGGCGCTTTACTGCTGCTTGGGAGCTTTACAAAGCTCAGGAGGATGTTGTGGCTGCTTGCAATGAGTATGGTATTAAGGTTACCCTGTTCCATGGCCGTGGAGGCAGTATTGGTCGTGGTGGTGGCCCAACTTCTCTGGCTATTCAGTCCCAACCACCTGGATCTGTGATGGGAATTCTTCGGTCAACTGAGCAGGGAGAGATGGTACAGGCCAAGTTTGGGTTGCCAGAGACAGCTATTAGGCAGCTTGAAATATACACAACAGCTGTGCTACTTGCCACCCTTCGTCCACCTCTCCCACCCCGAGATGAAAAATGGCGTAATCTCATGGAAGACATTTCAAAAATCAGTTGCCAGTGTTACCGCAGTGTTGTCTATGAAAATCCAGAATTCCTCACCTACTTCAATGAAGCCACACCTCAAGCAGAGCTTGGCTTCCTTAACATTGGTAGCCGCCCTGCGAGAAGAAAGAGCTCAACTGGAATTGGACACCTGCGTGCCATTCCCTGGGTATTTGCATGGACCCAAACCAGATTTGTTCTTCCTGCATGGCTTGGAGTTGGAGCAGGCTTAAAAGGTGCTTGTGAGAGAGGACAAACAGAAGAGCTAAAAGCCATGTACAAAGAGTGGCCTTTCTTTCAAAGTATAATAGACCTGATTGAGATGGTTTTGGGAAAAGCTGATATTCCTATTGCTAAGCACTATGATGAAGTTCTTGTGTCAGAGAAGAGACAAGAAATTGGTCGTCAACTAAGGAGTGAGCTCATAACAACTGGGAAGTTTGTACTAGTGATTACTGGGCATGAGAAGCTTCAGCAGAATAATAAGAGCTTAAGGAGGTTGATTGAGAGTAGACTTCCCTTTCTCAACCCCATGAACATGTTGCAGATTGAGATACTTAAGAGGTTAAGATGTGATAATGACAACCTTAAAGCCAGAGATGCTTTGCTTATCACCATTAATGGTATTGCTGCTGGGATGAGGAATACAGGATAA 3150 0.4371 MTDTTDDIAEEISFQSFDDDCRVLGNLLNDVLLREVGPVFVEKFEKIRLLAQSACNMRQAGIEDMAELLEKQLASDLSKMTLEEALTLARALSHYLTLISIAETHHKVRNGVNIAHIAKSCDDIFNQLVQGGVSPDELYNTVCKQEVEIVLTAHPTQINRRTLQYKHIKIAHLLDYNDRPNLSPEDREMVIEDLVREIISIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPRYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYVREVDSLRFELSMNQCSDKLSSLAHEILQEANHENHREHRSQLNHQNQEASSLQKLLPARFHLPSRDENGESEHPRLDIPGPDYIQLNVKDGKISSSTKSIGGSCNIHSSVASSAKSNASSSVAISRSPSFNSGQQLLAQRKLYAESQIGRSSFQKLLDPEHHQLPGIAPYRVILRNVKDKLLRTRKRLELLLEDGPCDHDPFDYYETTDQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETIDAITRYLGMGTYSEWDEEKKLDFLTRELKGKRPLVPPSIEVSPDVKEVLDTFRTAAELGSDALGAYVISMASNASDVLAVELLQKDARLAVSGELGRACPGGTLRVVPLFETVKDLRVAGSVIRKLLSIDWYRQHIIKNHNGQQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTSLAIQSQPPGSVMGILRSTEQGEMVQAKFGLPETAIRQLEIYTTAVLLATLRPPLPPRDEKWRNLMEDISKISCQCYRSVVYENPEFLTYFNEATPQAELGFLNIGSRPARRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLKGACERGQTEELKAMYKEWPFFQSIIDLIEMVLGKADIPIAKHYDEVLVSEKRQEIGRQLRSELITTGKFVLVITGHEKLQQNNKSLRRLIESRLPFLNPMNMLQIEILKRLRCDNDNLKARDALLITINGIAAGMRNTG* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00554 1049 MobiDBLite consensus disorder prediction 327 346 - -
Rops1g00554 1049 FunFam Phosphoenolpyruvate carboxylase 1 427 544 - -
Rops1g00554 1049 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1049 IPR015813 GO:0003824
Rops1g00554 1049 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1049 IPR022805 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 707 719 IPR033129 -
Rops1g00554 1049 Coils Coil 470 490 - -
Rops1g00554 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Rops1g00554 1049 Pfam Phosphoenolpyruvate carboxylase 457 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 Pfam Phosphoenolpyruvate carboxylase 19 342 IPR021135 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 289 364 - -
Rops1g00554 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 401 543 - -
Rops1g00554 1049 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Rops1g00554 1049 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00554 Rops-Chr1 13944287 13957070 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00554 1 13944287 13957070 Rops1g00554 1 13944287 13957070 ECH