Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00548 ATGAAGAGCTTCAACGCTTTTAGTCAAGTTATCTTCACTCTCTTCATTATCTCTCTGAGAGCAAGGTGCTTTGGACAAGTAGACCTTGATGTGGCTCCAATGGAGGAAAAGGAGAAGGATGCTCTTTATTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTGTTCAGGGGGTCTCTTGTGATTTATTTAATGGGTTTTGGTATGTTACTGTCATGAACATTGGACCCATTCATGACAATTCTCTAAGATGTGCCACAATTTTGGAATTTAGACCACAGTTGTTTGAGCTCAAGCACCTAAAAGCCCTATCCTTCTTCAAATGCTTTGAATCACAACACAGTCATCCAGTTACCATTCCCAATGGAAACTGGGAAAAACTGGCAGGCAGCTTAGAGTCACTTGAGTTTAGATCAAACACAGGTCTCATTGGAAAAATTCCTTCAAGTTTTGGTGTTCTCAAGAACCTTCAGTCACTGGTATTATTAGAAAATGGTTTAACAGGTCAAATTCCACCAGATATTGGCAACCTCAACAAATTGAAGAGACTTGTTCTTGCTGGAAACTATTTTACTGGGCAAATTCCAGATATTTTTAGTGCACTAAGTGAGTTGTTAATTCTTGATTTAAGTAGAAATTCATTGTCTGGGTCCTTGCCTTTGACTCTTGGAAGCTTAACTTCCCTTTTGAAGCTTGATTTGAGCCATAATAGTTTGGAGGGGAGTTTGTTGAAAGAATTTGCTTATCTCAAGAATCTGACCCTTATGGACCTTAGGAATAACAGATTCTCTGGAGGGTTGACCTTGAGTCTTCAAGAGATGTATTCTTTAGAAGAAATGGTTTTGTCCAACAATGCAATAGGTGGAAATATCAGGTCCCTAAAGTGGGTAAACCTTCGGAACTTGGTCATTTTGGATCTCTCTAACATGGGGTTGACAGGGGAAATTCCTGAGTCTATATCAGAATTGAAGAGGTTGAGATTTTTGGGCCTTAATGACAACTACCTCACAGGCAACCTTTCACCAAAACTATCAACTCTTCCTTGTCTCAATGCACTCTATGTTAATGGAAACAATCTTACAGGAGAGCTTGAATTCTCTATGGAGTTTTATGGAAAAATGGAAAGACGTTTTGGGGCATGGAGCAACCCCAGCCTTTGCTACCCAGTTGGAGTAATGTCAACAAGTTATGTTCCATATGGGGTACAACCATGCCAGAAAAATATTAAATTCCTAGAATCTAATACAAAAAATGGGGATGTGAATGTGACATTCCAATCCACACCCTCTGTGGCATTTTTGAGCTATGCTCCTAATGGCTTCTGAACCCTAATCCCCTTCTCTGCCATTTGCGATTTCAAGCCTTTGATTCTCTTTAGTAGTGGGGTTGAGGGAATTTTTGTGGCACTGGAATTCTCTCCTGGGAAGAACAGAGAAACCTCGTTTTGGACCTTCAAGTAA 1500 0.404 MKSFNAFSQVIFTLFIISLRARCFGQVDLDVAPMEEKEKDALYSTIQGFVGDWWNGSDLYPDPCGWTPVQGVSCDLFNGFWYVTVMNIGPIHDNSLRCATILEFRPQLFELKHLKALSFFKCFESQHSHPVTIPNGNWEKLAGSLESLEFRSNTGLIGKIPSSFGVLKNLQSLVLLENGLTGQIPPDIGNLNKLKRLVLAGNYFTGQIPDIFSALSELLILDLSRNSLSGSLPLTLGSLTSLLKLDLSHNSLEGSLLKEFAYLKNLTLMDLRNNRFSGGLTLSLQEMYSLEEMVLSNNAIGGNIRSLKWVNLRNLVILDLSNMGLTGEIPESISELKRLRFLGLNDNYLTGNLSPKLSTLPCLNALYVNGNNLTGELEFSMEFYGKMERRFGAWSNPSLCYPVGVMSTSYVPYGVQPCQKNIKFLESNTKNGDVNVTFQSTPSVAFLSYAPNGF*TLIPFSAICDFKPLILFSSGVEGIFVALEFSPGKNRETSFWTFK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00548 498 PRINTS Leucine-rich repeat signature 218 231 - -
Rops1g00548 498 PRINTS Leucine-rich repeat signature 239 252 - -
Rops1g00548 498 SUPERFAMILY L domain-like 45 378 - -
Rops1g00548 498 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 132 437 - -
Rops1g00548 498 Gene3D Ribonuclease Inhibitor 309 470 IPR032675 -
Rops1g00548 498 Gene3D Ribonuclease Inhibitor 35 308 IPR032675 -
Rops1g00548 498 FunFam Piriformospora indica-insensitive protein 2 307 407 - -
Rops1g00548 498 FunFam Piriformospora indica-insensitive protein 2 37 208 - -
Rops1g00548 498 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Rops1g00548 498 FunFam Piriformospora indica-insensitive protein 2 209 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00548 Rops-Chr1 13759470 13768423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00548 136 454 Receptor kinase-like Gene Family AT4G08850 31.304 4.71e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00548 1 13759470 13768423 Rops1g00548 1 13759470 13768423 ECH