Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00505 ATGAAAAGGGAAGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACATTCAGAACTATCAAGAGCAGCTACTCCTTCAGCAACAGATGCAACAACAAAATGGTGACATCTTTGGAAGTGGAAGAGGGTTGATGTTCCCTGAAGTTTCACCACTTTTACAGCCATGGTCCATGCCTCCGGTTCACTCCTTCAACCCGGTTCGGGACCATGACCCATTTCTAGTCCCTCCCACAGCTTCACCCTATGCAAGCTTTTTCAATAGAAGGGTTCCATCTCTTCAGTTTGCATATGAGGGTCCTTCTTCTGACCATCTAAGGATCATTTCTGATACCCTTGTTGGACCCATGGTTCAACCCGGTTCAGCTGCTTATGGACTCCAAGATGAGTTGGGTAAGATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAAAGAATCAACAACCATCTTGCAAAGCTTCGCAGCTTGCTACCCAACACAACCAAAACAGATAAAGCTTCATTGCTAGCAGAAGTAATTCAACATGTGAAGGAACTGAAGCGTCAAACTTCATTGATAGCAGAAACTAGTCCAGTACCTACAGAATCTGATGAGTTAACAGTGGATGCATCTGATGAAGATGGAAAGTTTGTGATCAAAGCCTCAGTATGCTGTGAAGATAGGTCAGATCTCTTACCAGACCTCATCAAAACATTGAAAGCGTTAAGGTTAAGAACCCTGAAAGCTGAGATAACAACACTTGGTGGACGTGTGAAGAACGTGCTTTTCATAACTGGGGAAGAGGATTCAAGTAGCAGTGGAGAACAAAGCATGCAGCAACAGTATTGTATTAGCTCAATACAAGAAGCACTTAAAGAAGTTATGGAAAAGAGTGGTGGGGAAGAATCAGCTTCTGGAAATGTTAAACGTCAAAGGACTAATATCAATATCCTTGAACAAAGGTCTTTATGA 999 0.4304 MKREEDQGQCSSQAINNIQNYQEQLLLQQQMQQQNGDIFGSGRGLMFPEVSPLLQPWSMPPVHSFNPVRDHDPFLVPPTASPYASFFNRRVPSLQFAYEGPSSDHLRIISDTLVGPMVQPGSAAYGLQDELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDASDEDGKFVIKASVCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSSGEQSMQQQYCISSIQEALKEVMEKSGGEESASGNVKRQRTNINILEQRSL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00505 332 CDD bHLH_AtAIG1_like 141 219 - -
Rops1g00505 332 Gene3D - 141 202 IPR036638 GO:0046983
Rops1g00505 332 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Rops1g00505 332 FunFam transcription factor bHLH30 141 204 - -
Rops1g00505 332 Coils Coil 317 332 - -
Rops1g00505 332 PANTHER TRANSCRIPTION FACTOR BHLH30 11 324 IPR045847 GO:0003700|GO:0006355
Rops1g00505 332 SMART finulus 152 201 IPR011598 GO:0046983
Rops1g00505 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 202 IPR036638 GO:0046983
Rops1g00505 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00505 Rops-Chr1 13339942 13342986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00505 11 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 59.384 4.62e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00505 HLH 2.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00505 1 13339942 13342986 Rops1g00505 1 13339942 13342986 ECH