Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00502 ATGGCCACCGTTGCAACTATAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCAAAGCACAAGTCCTTGTTTTTTGGGCAGGGACTTAGAATTAGACCCTTTATTGAGGCACCATGCAGTGCAAGATTCACTGTCTCAAACCCAAAAAGTTTTCAAGTTTTTGCACTGGGGCCTGAATGGTTTGACTCAGTTCACAACCTTTTTCTGGGTGTTGGGGTTGGGCTTCCTTGCACTGTCATGGAGTGTGGAGACATGATCTATAGGAGCACTCTTCCTAAGTCCAGTGGCTTAACACTTACTGTCCCTGGGGTGATTCTAGCTTTGGGTACTCTATCTTACCTCTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGAGCGTTTGGAGTGGTTTATAAGGTGACACTGGCTAACAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAAGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTTCGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAACTCTTCAAAGAAAGCTGCTGAATATTGGCTTATATGGCGGTTTGAAGGGGATGCCACCTTATCTGATCTGATGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTGATTCTGGGTGAGGTCCAAGACTTGCCCAAGGGATTGGAAAGAGAAAACAGAATAATTCAAACAATCATGAGGCAGCTCTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCCGAAGGGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACTGACCTGCGAGTTGGTATCAACTACATTCCGAAGGAGTTTCTTTTGGATCCGAGATATGCTGCCCCAGAGCAGTACATCATGAGCACGCAAACTCCATCCGCACCTTCAGCTCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTTGCCTGACAGATTCGACATCTATGGTACTGGTCTAATATTTCTTCAAATGACATTCCCTGGTTTACGCACTGATAATAGCCTCATACAATTCAACCGTCAACTGAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTCGAGCCTCGATGTGGCCCTGAACTTAGAAAGGGCTTTGAGCTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGAAATCAATGGTTCGATACAAGGCAAGGCAAAGGCTTAGTGCTAAAGCAGCATTAGCACATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAAATCTTAGGCTGCAGCTCTTACGAGCAACTCAACAAGATTATGGAGAAGCCGTCAAGTGGATTACTGAGCTAATGGCAAAATCAGGAACACAGAAGGATGGTGGATTTACTGAAGCTCAGCTTCAGGAACTGAGAGAAATTCAACCCAAGAAGAAAACTAATGCACAGAGAAATGCTCTAGCTTCAGTTCTTAAACTTCGGAGGAAAATTCTAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGTTTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1734 0.4383 MATVATIGIGVGVTKLQPHKPKHKSLFFGQGLRIRPFIEAPCSARFTVSNPKSFQVFALGPEWFDSVHNLFLGVGVGLPCTVMECGDMIYRSTLPKSSGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGAFGVVYKVTLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLENSSKKAAEYWLIWRFEGDATLSDLMQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYGTGLIFLQMTFPGLRTDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGPELRKGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAVKWITELMAKSGTQKDGGFTEAQLQELREIQPKKKTNAQRNALASVLKLRRKILRTLNESMDELNRRRKSFWWSRWIPREE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00502 577 Gene3D Phosphorylase Kinase; domain 1 135 229 - -
Rops1g00502 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 60 552 - -
Rops1g00502 577 ProSitePatterns Protein kinases ATP-binding region signature. 155 182 IPR017441 GO:0005524
Rops1g00502 577 SMART serkin_6 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00502 577 ProSiteProfiles Protein kinase domain profile. 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00502 577 Pfam Protein kinase domain 151 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00502 577 FunFam Serine/threonine-protein kinase STN7, chloroplastic 258 472 - -
Rops1g00502 577 SUPERFAMILY Protein kinase-like (PK-like) 144 470 IPR011009 -
Rops1g00502 577 CDD STKc_SNT7_plant 153 467 - -
Rops1g00502 577 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Rops1g00502 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00502 Rops-Chr1 13190340 13194542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00502 267 468 Core Cell Cycle Gene Families AT2G38620 30.516 4.65e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Rops1g00502 Pkinase 1.7e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00502 1 13190340 13194542 Rops1g00502 1 13190340 13194542 ECH