Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00495 ATGCAAGCTCACTCGTTCTCCTACATATCCTCTTGTGAGAGCAGTGGCTTCTTGGAACCTGATGAGCCTTCAGTTGATGAAGCCTCCATTTCCCTCTCTCTTGGTCTTCCTGGCCAACACAACCCAAAAGTCTCATCCTCAAACCACTCTGCTAATCTGCATCATAATCAGCAAAACCCTACCTCTGATAATGACCAGAGTGGTGTAACAGTTGCCCTTCACATTGGCCTTCCCACCACTTCACCAAACACCATCACTCCCATTAGCAAACCAGATCATCATTTGGCTTCAACTCCTATTCAGGCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTATTGGACCAACCCAGTTCTCTTGCACAGTTTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGAAAAGGACCTGAATCATTGAGAGGAGCAAAACCAGCTTCATCAATGCTGAGGCTTCCTTGCTATTGCTGTGCTGAGGGTTGCAAGAACAACATAGATCATCCAAGATCAAGACCACTGAAGGATTTCAGGACCCTTCAAACACACTACAAGAGGAAGCATGGAGCAAAGCCATTCGGGTGCAGAAAGTGTGGGAAACCCTTTGCAGTAAGAGGAGATTGGAGAACACATGAAAAGAACTGTGGGAAACTTTGGTTCTGCATTTGTGGTTCTGATTTCAAACACAAAAGATCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGTTCCACACACCGTGGAGAGTTGTGATCAGTTGGGAGAAGAACAAGAATTATTAGATGATGAAGAGGATGAAGAATTAGAAGAAGAAGAAGAAGATGATGATGAAAACAATGAAGCAGTTTTTTGCATTTAA 897 0.4404 MQAHSFSYISSCESSGFLEPDEPSVDEASISLSLGLPGQHNPKVSSSNHSANLHHNQQNPTSDNDQSGVTVALHIGLPTTSPNTITPISKPDHHLASTPIQAQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHVPHTVESCDQLGEEQELLDDEEDEELEEEEEDDDENNEAVFCI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00495 298 SUPERFAMILY beta-beta-alpha zinc fingers 115 140 IPR036236 -
Rops1g00495 298 FunFam Zinc finger protein WIP2 173 255 - -
Rops1g00495 298 MobiDBLite consensus disorder prediction 34 67 - -
Rops1g00495 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Rops1g00495 298 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Rops1g00495 298 PANTHER ZINC FINGER PROTEIN WIP2 44 287 IPR043584 GO:0003700|GO:0010468
Rops1g00495 298 MobiDBLite consensus disorder prediction 273 298 - -
Rops1g00495 298 MobiDBLite consensus disorder prediction 32 67 - -
Rops1g00495 298 Coils Coil 266 293 - -
Rops1g00495 298 SUPERFAMILY beta-beta-alpha zinc fingers 187 224 IPR036236 -
Rops1g00495 298 Gene3D Classic Zinc Finger 200 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00495 Rops-Chr1 12963026 12964577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00495 24 260 C2H2 Transcription Factor Family AT1G13290 71.605 2.28e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g00495 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00495 1 12963026 12964577 Rops1g00495 1 12963026 12964577 ECH