Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00480 ATGGAAACTCTCACTTCTCTCATTCTCTTCCTCTTCTTCCTTTTTTCCTCTTATCCATTAACACACTCTCGAACCACACCTCTTGGCCCCAAAACGACAGTTCTCGACGTCGTTTCATCACTTCAAAAAACACAAACAGTTTTCACGTTAAACGACCAACAATCTTCGCTCTCTCTTAAACTGCATTCTCGAGCTTCAATTCAAAAACACAATCACAGTGACTACAAGACTCTGATTCTATCGCGACTCGAACGTGACTCAGTCCGAGTCAGAGCCTTACAAACTCGTGTAGATCTCGCCACGAAGCGCATCTCCGAATCGGATCTTCACCCGGTCGAGTCGGAAAACGAGTTCGAATCCGAGAAACTAAAAGGTCCAATCGTCTCAGGAACGAGTCAGGGAAGTGGCGAGTACTTCCTCCGAGTTGGAATCGGAAAACCACCGAGTCAAGCATACCTGGTTATCGACACGGGAAGTGACGTCAGCTGGATCCAATGCGCGCCTTGCTCCGAATGTTACCAACAATCCGACCCGATTTTCGACCCGGTTTCGTCGGGCTCTTACGCTCCGATTCACTGTGACGCGCCGCAGTGTAAGTCCCTGGACCTCTCTGAATGCAGCAACGAAACGTGCCTCTATGAGGTTTCTTATGGAGATGGATCCTACACTGTTGGTGAGTTCGTTACTGAGACGGTTACTCTCGGCTCGGCTTCTGTTGACGGCGTCGCCATCGGCTGTGGACACAATAACGAAGGGTTATTCGTTGGAGCCGCCGGCTTACTCGGCTTAGGCGGCGGCTCGCTTTCCTTCCCGGCTCAACTCAACGCCACGTCATTCTCTTACTGTCTTGTGGACCGCGATTCCGACTCAGCTTCGATTCTTGAGTTTGACTCGCCATTACCGCCTAGCGCCGTTACCGCGCCGTTACGGAAGAATCCGGAGTTTGACACGTTTTATTATCTTCACTTAACGGGACTCAGCGTCGGCGGTGAGATGCTTCCGATTCCCGAGACGAGTTTTGAACTTGACGCCACCGGCGGCGGAGGGATAATTGTGGATTCCGGCACGGCGGTGACACGGTTGAGGAGCGAGGTGTACGACGAGCTCCGGGATGCGTTTAAAAGGGAGACGCGGGGGTTGCAGGAGGCGAACGGCGTGTCGTTGTTCGACACGTGCTATGACTTGTCGTCGAGTTCCAGCGTGGAGGTCCCAACGGTGTCGTTTCATTTTCCTGAGGGGAAGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGACTCGGTGGGAACGTTTTGTTTTGCTTTCGCTCCCACGACGTCTTCGTTGTCAATCATTGGGAACGTGCAGCAGCAAGGGACACGTGTCGGTTTCGATATTGCTAATTCGCTCATTGGATTCTCTGCTAATAGTTGCTAG 1422 0.5197 METLTSLILFLFFLFSSYPLTHSRTTPLGPKTTVLDVVSSLQKTQTVFTLNDQQSSLSLKLHSRASIQKHNHSDYKTLILSRLERDSVRVRALQTRVDLATKRISESDLHPVESENEFESEKLKGPIVSGTSQGSGEYFLRVGIGKPPSQAYLVIDTGSDVSWIQCAPCSECYQQSDPIFDPVSSGSYAPIHCDAPQCKSLDLSECSNETCLYEVSYGDGSYTVGEFVTETVTLGSASVDGVAIGCGHNNEGLFVGAAGLLGLGGGSLSFPAQLNATSFSYCLVDRDSDSASILEFDSPLPPSAVTAPLRKNPEFDTFYYLHLTGLSVGGEMLPIPETSFELDATGGGGIIVDSGTAVTRLRSEVYDELRDAFKRETRGLQEANGVSLFDTCYDLSSSSSVEVPTVSFHFPEGKELPLPAKNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLIGFSANSC* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00480 473 PANTHER ASPARTYL PROTEASES 19 467 IPR001461 GO:0004190|GO:0006508
Rops1g00480 473 Gene3D Acid Proteases 112 296 IPR021109 -
Rops1g00480 473 ProSiteProfiles Peptidase family A1 domain profile. 138 469 IPR033121 -
Rops1g00480 473 Pfam Xylanase inhibitor C-terminal 319 469 IPR032799 -
Rops1g00480 473 Gene3D Acid Proteases 300 473 IPR021109 -
Rops1g00480 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 153 164 IPR001969 GO:0004190|GO:0006508
Rops1g00480 473 SUPERFAMILY Acid proteases 131 473 IPR021109 -
Rops1g00480 473 FunFam Aspartyl protease family protein 2 298 473 - -
Rops1g00480 473 FunFam Probable aspartic protease At2g35615 117 297 - -
Rops1g00480 473 Pfam Xylanase inhibitor N-terminal 138 296 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00480 Rops-Chr1 12410468 12412341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00480 96 473 Miscellaneous Gene Families AT1G77480 26.506 9.16e-25 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00480 1 12410468 12412341 Rops1g00480 1 12410468 12412341 ECH