Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00478 ATGAAAAATATGCATAGCTTCAAGACAGCTCAAGCAAGCTCTCATCATCTCTATTGTCACCCTTCCTTCTTGCTTCGGGGAGAGGATACTACTAACCGAAACCCATCACGTTTCTCTGATCTTGGGCAACTTCACCATTCCTCTTCTGTCTTTCAACAAGAAGAAGATGCTGTTGATTTCAGCTCAAGCTCTATGTTTAGTGTAAAATCGAACAACGTTGTTGTTGGTGGTAGTAACATGCAGTATGGGACATTGAACACGAATGCTGGGTCTGCAGAGATTGCTTCAACAGGGGCAGGGTGTTTGGATACAGGGCAGCAACTTATGTACCACAAAGGAATAGCCATGGCCACCTTGCCTTTAGGGAATTGTCATGTTGAGAATTGGGCTGATTCAGGCATGGCAGATAATAGCCAACAGACTGATGATACTTCCACAGATATTGACACTGATGATAAAATCCAATGTAATAGAGTTAGGAATGAGGCACGTGTGGTTGTGCACTCTAAGGATCAGACAAAGCTCAAAGCTGAAGATCAAAAGACCCTTCGTAGATTGGCACAGAATCGGGAGGCTGCAAAGAAGAGTCGGTTACGGAAAAAGGCATATGTACAGCAGCTGGAGAACAGCAGAGTCAAGCTTGTGCAATTAGAACAAGAACTTCAACGAGCACGTCAGCAGGGTATATTTATTGCAACTCCTGGAGATCAAGGACATTTGGCTGTTGGAAATGGTGCCATGGCATTTGACATGGACTATGCCCACTGGGTTGATGAGCATCAACATCTGCTCAATGACCTAAGATCAGCTCTAAATTCTCAAATGGGTGACAATGAACTACATCTTCTTGTTGATGGTGTCATGGCACATTATGATGAATTATCTAGGTTAAAGAGTATAGGGGCAAAGGCTGATGTATTTCACATGCTTAATGGGCTGTGGAAGACCCCTTTGGAAAGATGGTTTATGTGGCTTGGTGGATTCCGTTCATCTGAACTTCTCAAGATTATTAAGAACCACCTTGAGCCATTAACAGAACAGCAGTTGATGGGCATCTATAATCTGCAGCAGTCTTCCCACCAGGCTGAAGATGCTTTAACTCAAGGCATGGAAGCATTGCAACAATCTCTTATAGAGACACTTTCATCTACTTCTCTAGGACCTACTGGTACTGGAAATGTTGCTGATTACATGAACCAAATGGCAGTTGCAATGGGCAAGCTTGCTACACTGGAGAGTTTCCTTCATCAGGCTGACCTCTTGAAGCAACAAACTCTGCAACAGTTGCAAAGAATTTTGACTACACGCCAGACTGCTCGTGCCCTCCTTGTCAGAAATGATTACATTTCAAGACTTAGAGCACTTAGTTCATTATGGTTAGCACGCCCTAGAGAATAG 1398 0.4356 MKNMHSFKTAQASSHHLYCHPSFLLRGEDTTNRNPSRFSDLGQLHHSSSVFQQEEDAVDFSSSSMFSVKSNNVVVGGSNMQYGTLNTNAGSAEIASTGAGCLDTGQQLMYHKGIAMATLPLGNCHVENWADSGMADNSQQTDDTSTDIDTDDKIQCNRVRNEARVVVHSKDQTKLKAEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGIFIATPGDQGHLAVGNGAMAFDMDYAHWVDEHQHLLNDLRSALNSQMGDNELHLLVDGVMAHYDELSRLKSIGAKADVFHMLNGLWKTPLERWFMWLGGFRSSELLKIIKNHLEPLTEQQLMGIYNLQQSSHQAEDALTQGMEALQQSLIETLSSTSLGPTGTGNVADYMNQMAVAMGKLATLESFLHQADLLKQQTLQQLQRILTTRQTARALLVRNDYISRLRALSSLWLARPRE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00478 465 ProSiteProfiles DOG1 domain profile. 246 462 IPR025422 GO:0006351|GO:0043565
Rops1g00478 465 Pfam Seed dormancy control 264 338 IPR025422 GO:0006351|GO:0043565
Rops1g00478 465 PANTHER TRANSCRIPTION FACTOR TGA9 126 465 - -
Rops1g00478 465 Pfam bZIP transcription factor 180 220 IPR004827 GO:0003700|GO:0006355
Rops1g00478 465 FunFam BZIP family transcription factor 180 229 - -
Rops1g00478 465 SMART brlzneu 177 246 IPR004827 GO:0003700|GO:0006355
Rops1g00478 465 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Rops1g00478 465 Coils Coil 176 196 - -
Rops1g00478 465 CDD bZIP_HBP1b-like 181 233 - -
Rops1g00478 465 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Rops1g00478 465 Coils Coil 200 227 - -
Rops1g00478 465 Gene3D - 179 229 - -
Rops1g00478 465 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00478 Rops-Chr1 12355145 12360154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00478 6 465 bZIP Transcription Factor Family AT1G68640 55.603 2.63e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops1g00478 DOG1 1.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00478 1 12355145 12360154 Rops1g00478 1 12355145 12360154 ECH