Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00193 ATGTCAACTTTGACCGTACCTCCAGTGTTACCATCTCCTCGTGAAGATGCTCTCAAGCTGCATAAAGCCTTCAAAGGTCTTGGCTGTGATACCTCTAAAGTTATCCAAATCCTTGCTCACAGGAATTCAGAACAGCGCAGCCTCCTTCAACAAGAGTATGAAACTACCTATTCTGAACCACTTTGCAAACGGATATCTTCAGAGCTTCACGGGTATACCAAGAAAGCACTATCACTTTGGCTGCATGATCCTGCAACCCGGGATGCTATCATAGCAAGGAAAGCCTTAACTGCACCAGTTGTTGATAATCAAGCTATAACAGAAGTGATATGTTCTCGTACCCCATCACAACTAAGGCGATTCAAAGAAGTTTATCTGTCAACATACCATTCCTATCTTGAACATGACATTGAAAACCAAACCAGTGGAGATTACAAGAAGTTGTTGCTTGCATATGTAAGTACACCACGTTATGAAGGCCCAGAATTGGATGATGCAATGGTACAACAGGACGCTAAACAACTATTCAAATCAGGTGAGAAGAGGTTAGGAACTGATGAGAAGATGTTCATAAAGATCTTTAGTGAAAGAAGCAGCACACATTTGGCTGCGGTCAGTGATGCTTACAGAGCTTCATTTGGAAACACTTTGGAAAAGGCAATAAAGCATGAAACATCTGGCAACTTTTTGAGTGGCCTCTTGACCATACTACGATGTGCTACTAACCCTGCTATGTACTTTGCCAAGCTTCTGCGCAAGTCAATGAAGGGTGTGGGAACTGATGATAAAAGACTAATAAGGGTAATTGTGACAAGGACTGAGATAGACATGCAACATATAAAAGCAGCATATTATAGTAAATATGGAAAACCATTAACCCATGCTGTTCGTTCAGACACATCAGGCCATTATAAAGACTTCCTTTTACATCTTTTAGAGCTTCAGAAGTTCCAACATCAACCAAAACATGATGGATCCCTCAGCTTTCTAGTCATTGGAGATTGGGGTAGAAAAGGGCTATATAATCAATCCCTGGTTGCCACCCAGATGGGAAAGATGGGAGACAAACTTGACATAGATTTTGTGGTATCTACCGGAGACAATTTCTATTTGAATGGATTAAAAGGTGTAAATGATCCAGCATTTCGGGAGTCATTTTCCAATATTTACACTGCTGAGAGCCTCCAAAAGCCATGGTACTCTGTTTTGGGAAACCATGACTATAGGGGTGATGCACTGGCACAATTAAGTCCTATCTTGAGGAAAATTGATAGAAGATGGTTTTGCATGCGATCATTCACTCTTAATGCAGGAATTGCTGAATTTTTCTTCATAGACACAACCCCATTTATAAACGATTATTACAATGATTCCGAACATACTTATGATTGGCGAGGTGTGTCTCCGAGGCTAATTTACCTCAACAATTTTCTGAAGGATTTTGAAGCATCATTGAAGAAATCAACCGCAAGATGGAAAATCGTTGTGGGTCACCATGGAATAAGAAGTATTGGGCATCATGGTGACAGTCCAGAGCTTGTAAAGCATCTCATCCCAATACTAAAGGCCTACAATGTTGATATGTACGTGAATGGGCATGACCATTGCCTTCAGCATATACTTAGCAAAGACAGGTGCACCATTGAACCCGTTGCCATCTGTTCCTTCAACCAAGATCAAACACACAAGAGAGAAGTTGAGTTCTTAGAAGCATTTTTTCAGAGTAAAAGCATATTCTCACAACAGTTATTGATCATGGAGCCCGGAAGTGAGCAGTCAAATTCAGACAGAGAAATACGAGGCTCAGGCTCTTCTTCAAAGAAAGCAAAGGATCTCAACATTGAAGGATACCCAGTTGGGGGTTTGTCCATTGGAGGCCATGAAACATGTATAATTTTTCCCACACTTAAAGTAGCCTTTGATATTGGTCGCTGCCCACCTCGCGCTGTTTCCCAAGACTTTCTTTTAATATCCCATGCTCACATGGATCACATTGGAGGACTACCAATGTATGTTGCCACACGTGGTTTGTATCGAATGAAGCCCCCAACAATTATCGTACCAATTTCAGTAAAAGAGGATGTAGAGAAACTCTTTGAGGTTCACAGGAAAATGGACCAATCGGAGCTTAAGCACAACCTGGTTGGCTTGGATGTAGGAGAAGAGTTTTATTTGAGAAAGGATCTTAAAGTAAAAGCTTTTCGGACTTACCATGTAATACCCAGCCAGGGTTATATACTTTACATTGTGAAACAGAAGCTTAAACCAGAGTATATCGGCCTTTCAGGAAATGAAATTAAGAATTTGAAGTTATCTGGTGTGGAGATAACAAACACTTTGACAGAACCAGAGATTGCTTTCACAGGCGACACCATGTCAGATTTCATAGTTGATGAAAATAACACTGATGTCTTGCGGGCTAGAGTTCTTGTATCAGAGTGTACCTTTATTAACAATTCAATTACTGTGGAACATGCCAAAGATTATGGACACACTCACCTGTCTGAGATAATAAGTTATGCTGAAAGGTTACAGAACAGAGCAATCCTTTTGATTCACTTTTCAGCACGTTACACAGTAGAGGAAATTCAACAAGCTGTATGTGCATTGCCTCCCCCTTTAGCTGGTCGAACTTTTGCACTTACTGAAGGTTTCTGA 2658 0.4074 MSTLTVPPVLPSPREDALKLHKAFKGLGCDTSKVIQILAHRNSEQRSLLQQEYETTYSEPLCKRISSELHGYTKKALSLWLHDPATRDAIIARKALTAPVVDNQAITEVICSRTPSQLRRFKEVYLSTYHSYLEHDIENQTSGDYKKLLLAYVSTPRYEGPELDDAMVQQDAKQLFKSGEKRLGTDEKMFIKIFSERSSTHLAAVSDAYRASFGNTLEKAIKHETSGNFLSGLLTILRCATNPAMYFAKLLRKSMKGVGTDDKRLIRVIVTRTEIDMQHIKAAYYSKYGKPLTHAVRSDTSGHYKDFLLHLLELQKFQHQPKHDGSLSFLVIGDWGRKGLYNQSLVATQMGKMGDKLDIDFVVSTGDNFYLNGLKGVNDPAFRESFSNIYTAESLQKPWYSVLGNHDYRGDALAQLSPILRKIDRRWFCMRSFTLNAGIAEFFFIDTTPFINDYYNDSEHTYDWRGVSPRLIYLNNFLKDFEASLKKSTARWKIVVGHHGIRSIGHHGDSPELVKHLIPILKAYNVDMYVNGHDHCLQHILSKDRCTIEPVAICSFNQDQTHKREVEFLEAFFQSKSIFSQQLLIMEPGSEQSNSDREIRGSGSSSKKAKDLNIEGYPVGGLSIGGHETCIIFPTLKVAFDIGRCPPRAVSQDFLLISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEVHRKMDQSELKHNLVGLDVGEEFYLRKDLKVKAFRTYHVIPSQGYILYIVKQKLKPEYIGLSGNEIKNLKLSGVEITNTLTEPEIAFTGDTMSDFIVDENNTDVLRARVLVSECTFINNSITVEHAKDYGHTHLSEIISYAERLQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00193 885 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 SUPERFAMILY Annexin 2 316 IPR037104 GO:0005509|GO:0005544
Rops1g00193 885 Gene3D - 619 870 IPR036866 -
Rops1g00193 885 FunFam Annexin 157 242 - -
Rops1g00193 885 PANTHER TRNASE Z TRZ1 589 885 - -
Rops1g00193 885 CDD RNaseZ_MBL-fold 612 814 - -
Rops1g00193 885 SUPERFAMILY Metallo-dependent phosphatases 326 548 IPR029052 -
Rops1g00193 885 ProSiteProfiles Annexin repeat profile. 166 238 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 FunFam Annexin 243 314 - -
Rops1g00193 885 Pfam Calcineurin-like phosphoesterase 328 536 IPR004843 GO:0016787
Rops1g00193 885 CDD MPP_ACP5 327 582 IPR024927 GO:0003993
Rops1g00193 885 ProSiteProfiles Annexin repeat profile. 242 313 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 ProSitePatterns Annexin repeat signature. 259 311 IPR018252 GO:0005509|GO:0005544
Rops1g00193 885 FunFam Purple acid phosphatase 3 322 535 - -
Rops1g00193 885 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Rops1g00193 885 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Rops1g00193 885 SUPERFAMILY Metallo-hydrolase/oxidoreductase 629 863 IPR036866 -
Rops1g00193 885 Gene3D Annexin 157 242 IPR037104 GO:0005509|GO:0005544
Rops1g00193 885 SMART annex3 101 152 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 SMART annex3 184 236 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 SMART annex3 259 311 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 Gene3D - 322 582 IPR029052 -
Rops1g00193 885 Gene3D Annexin 243 314 IPR037104 GO:0005509|GO:0005544
Rops1g00193 885 PRINTS Annexin family signature 255 275 IPR001464 GO:0005509|GO:0005544
Rops1g00193 885 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Rops1g00193 885 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Rops1g00193 885 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Rops1g00193 885 PRINTS Annexin family signature 299 312 IPR001464 GO:0005509|GO:0005544
Rops1g00193 885 Pfam Beta-lactamase superfamily domain 651 854 IPR001279 -
Rops1g00193 885 Pfam Annexin 16 77 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 Pfam Annexin 170 236 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 Pfam Annexin 246 311 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 Pfam Annexin 88 151 IPR018502 GO:0005509|GO:0005544
Rops1g00193 885 MobiDBLite consensus disorder prediction 589 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00193 Rops-Chr1 5802370 5834883 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00193 1 5802370 5834883 Rops1g00193 1 5802370 5834883 ECH