Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03505 ATGAAGAGGGATCACCAAGAAACCATGGGTGGAGGTGTTGTGAAAGGTGAATGCTCATCAATGCGAAACGGGAAAGGGAAGATGTGGGAGGAAGAACAGCAACAACACGACGGTGGTGGAATGGATGAGTTACTAGCTGCTTTGGGTTACAAGGTTCGTTCTTCAGACATGGCTGACGTGGCCCAGAAGCTTGAACAACTTGAGATGGTTATGGGCAGTGCCCAAGAAGATGGAATTTCACACCTTTCTTCTGATACCGTTCACTATGACCCAACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTTCAACAAACACCACCACCAACAACAACACAATCCTCGATCCATCATCTCTCTTAGAAAACCCTCAAATCAACGACCCATTAGACCCATCTTCCATTCTCAATAACACATCAAGGGCCTTCAACGATGACTCAGAATATGACCTCAGAGCAATCCCTGGTATAGCCGTATACCCACAACATCAAAACCAAGACAACAAGAACAACAACAACGAAATCGAACACAACAAACGTTTGAAAACAACATGGGCAATCGAATCTGATTCGGTTCCTGAGCCTACAAGACCAGTGGTTCTTGTTGATTCACAAGAAACAGGTGTTCGTTTGGTTCATACTTTGATGGCTTGTGCTAAAGCTGTTCAACAAGAGAATCTTGAACTTGCAGACACGTTGGTGAAGCATATTGGATTGTTAGCAGCTTCACAAGCTGGAGCTATGAGAAAGGTTGCATCTTACTTTGCACAAGCACTTGCTAGAAGAATTTATGGTATCTACCCTGAAGAAACCTTGGATTCTTCATTCTCCGATGTGTTACACATGCACTTTTATGAGTCTTGCCCTTACCTGAAATTCGCACACTTCACGGCGAACCAGGCTATTTTGGAGGCTTTTGCCACCGCCGAAAGAGTCCACGTCATCGATTTTGGTCTTAAACAAGGGATGCAATGGCCGGCATTGATGCAAGCACTCGCATTGCGCCCCGGTGGTCCCCCAACTTTCCGGTTAACCGGAATCGGACCACCGCAACCCGACAACACCGACGCGCTTCAACAGGTTGGTTGGAAGTTAGCTCAGTTGGCTCAAACCATCGGTGTTCAGTTCGAATTTCGTGGATTCGTATGTAACAGTCTCGCGGATCTTGACCCGAATATGCTCGAGATCCGACCCGGTGAAGCCGTTGCTGTTAACTCAGTCTTCGAGCTTCACCCCATGTTAGCCCGACCCGGATCCGTTGACAAGGTACTTTGCACTGTTAAGAAGCTTAAGCCTAAAATCGTTACAATCGTTGAACAAGAAGCGAACCATAACGGACTGGTTTTCGTGGACCGGTTCACTGAGGCCTTACATTACTACTCTAGTTTGTTTGACTCGTTGGAGGGTTCAACCGGGTCGGGTTCACCGAGTCAGGATCAGATGATGTCGGAGATTTACTTGGGGAGACAAATTTTGAACGTGGTGGCTTATGAAGGGGTGGACCGGGTTGAGAGGCATGAGACTTTGAACCAGTGGAGGGGGAGAATGGGTTCGGCGGGGTTCGACCCGGTTCATCTTGGGTCCAATGCTTTTAAACAAGCTAGTATGTTGTTGGCTCTTTTCGCCGGCGGTGATGGGTATAGGGTGGAGGAGAATAATGGGTGTTTGATGCTTGGGTGGCACACGAGGCCACTCATTGCTACCTCGGCTTGGAAGCTTCCACTGAGTGAGTCATAG 1749 0.4774 MKRDHQETMGGGVVKGECSSMRNGKGKMWEEEQQQHDGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEDGISHLSSDTVHYDPTDLYSWVQTMLTELNPSTNTTTNNNTILDPSSLLENPQINDPLDPSSILNNTSRAFNDDSEYDLRAIPGIAVYPQHQNQDNKNNNNEIEHNKRLKTTWAIESDSVPEPTRPVVLVDSQETGVRLVHTLMACAKAVQQENLELADTLVKHIGLLAASQAGAMRKVASYFAQALARRIYGIYPEETLDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFATAERVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHPMLARPGSVDKVLCTVKKLKPKIVTIVEQEANHNGLVFVDRFTEALHYYSSLFDSLEGSTGSGSPSQDQMMSEIYLGRQILNVVAYEGVDRVERHETLNQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPLSES* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03505 582 Pfam GRAS domain family 215 576 IPR005202 -
Rops11g03505 582 FunFam DELLA protein GAI 40 105 - -
Rops11g03505 582 Coils Coil 57 77 - -
Rops11g03505 582 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 163 572 IPR005202 -
Rops11g03505 582 SMART DELLA_2 42 115 - -
Rops11g03505 582 Pfam Transcriptional regulator DELLA protein N terminal 42 109 IPR021914 -
Rops11g03505 582 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g03505 582 Gene3D - 40 105 IPR038088 -
Rops11g03505 582 ProSiteProfiles GRAS family profile. 206 576 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03505 Rops-Chr11 67075015 67077474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03505 43 577 GRAS Transcription Factor Family AT3G03450 65.314 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops11g03505 GRAS 3e-139 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03505 11 67075015 67077474 Rops11g03505 11 67075015 67077474 ECH
Rops11g03505 11 67075015 67077474 Rops3g00791 3 9664305 9667739 ECH