Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01624 ATGGCCACACAACTTGAATGCTTTTCCCAACCTGTTCAAACTAACCTGAGTACCTCAAACCTCTCACCAAGGACACCAACAATGGCAACTAGATCTTTGGTCTTGTTCTTGCTTCTGGGGTTGGCTTGTCTCATTGTAATTTGTGCTTGTGGGGAGAACTTGCCTCCTCTTAGGACCATTTCTGGTGGCAACTATCATGAAGCAATACGTAGGTTGCATTCATTTAAGGCCTCTCTAACTAGACATGATTCCATTGCTTCAGAACCATCTTCTTCCTTCTCACCCTCTCCTGGCCCTTCTCCTTCTCCTCAGCCAATTCAGGGTGTGAACAATCCAAGGGTATACCATGTAACATCTTATGGTGCAGACCCCACAGGCAATTCAGACAGCACTGAAGCACTCCTTGCAGCCATAGCAGATGCAGCCAAGGGTCCTAGTGAAGGACATTTGATAGAAGGCATCAGAGACCTTGGAGGTGCCCAGATTAATCTTGAGGGTGGAAATTACATGATCAGCAGGTCACTGAAGTTGCCAGAAGCCAGGGTGGGGAACCTCATGATACATGGGGGAACCATAAGAGCCTCAGATAATTTTCCAGAAGATGGCTACATCATTGATTTGTCAATCTCTTCAAATGAGAACAGTGGAGAAAACAGCAAGAGTTCCCCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGACCTCTTGTTGGACTCAAACTTCAAGGGAGGAGGCATTTCAGTGATAAACTCACTTAGAACTAACATAGACAACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAACATGGCCATGAAACCTACATCAGAAACTCCTTCCTTGGCCAGCATATAACTGCAGGTGGGGATAAAAATGAAAGAAACTTCTCAGGCACAGGAATAAGCCTCCAGGGTAATGATAATGCTGTCACAGATGTTGTAATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAGGCCAACACTTTTTCTGGGGTACATTGTTACAATAAGGCCACGGGCTTTGGTGGTACAGGGATTTATTTGAAGCTACCAGGTTTAACACAAACCAGGATAGTGAATTCTTACATGGATTACACCAGTATTGTTGCAGAAGACCCGGTTCAACTCCATGTTTCTAGCAGTTTCTTCCTTGGTGATGCCAATATTGTCCTAAAATCTATCAATGGGGTTGTAAATGGTGTTGATATTGTTGATAACATGTTCTCTGGCTCGAATAATGGGGTTGAAATTGTTCAGCTGGACCAATCAAATGGTCGTTTCCATCAAGTGGATCAAGTTATTGTTGATAGGAACATTGCAAGGGGGATGAACTTAAAGGCCACTGTTGCAAAAGTGTCTAAGCAAGGGAATGGAACCTCATGGATTGTTGATTTTAACAAGATTCTTCTTTTCCCTAACCTTATAAAAAATGTTCAGTACTCATTAAGCTCCACTGGCAGCACCTTCCCTAATCATGCTCTGAGGAATGTGTCTGAGAATCGCATTGTTATTGAAACAAATGAAGCTGTAAATGCAAATGTTTTTGTTGCAGTGGATCAAAGCATGACAAGTTGA 1596 0.4261 MATQLECFSQPVQTNLSTSNLSPRTPTMATRSLVLFLLLGLACLIVICACGENLPPLRTISGGNYHEAIRRLHSFKASLTRHDSIASEPSSSFSPSPGPSPSPQPIQGVNNPRVYHVTSYGADPTGNSDSTEALLAAIADAAKGPSEGHLIEGIRDLGGAQINLEGGNYMISRSLKLPEARVGNLMIHGGTIRASDNFPEDGYIIDLSISSNENSGENSKSSPSSSYNFEYITLKDLLLDSNFKGGGISVINSLRTNIDNCYITHFTTNGILVQHGHETYIRNSFLGQHITAGGDKNERNFSGTGISLQGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHVSSSFFLGDANIVLKSINGVVNGVDIVDNMFSGSNNGVEIVQLDQSNGRFHQVDQVIVDRNIARGMNLKATVAKVSKQGNGTSWIVDFNKILLFPNLIKNVQYSLSSTGSTFPNHALRNVSENRIVIETNEAVNANVFVAVDQSMTS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01624 531 MobiDBLite consensus disorder prediction 85 111 - -
Rops11g01624 531 SUPERFAMILY Pectin lyase-like 113 504 IPR011050 -
Rops11g01624 531 Gene3D - 114 531 IPR012334 -
Rops11g01624 531 FunFam Polygalacturonase QRT3 117 522 - -
Rops11g01624 531 PANTHER POLYGALACTURONASE QRT3 47 529 IPR039279 GO:0004650
Rops11g01624 531 SMART pbh1 310 331 IPR006626 -
Rops11g01624 531 SMART pbh1 405 426 IPR006626 -
Rops11g01624 531 SMART pbh1 253 275 IPR006626 -
Rops11g01624 531 SMART pbh1 182 207 IPR006626 -
Rops11g01624 531 Pfam Pectate lyase superfamily protein 117 347 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01624 Rops-Chr11 24780238 24782802 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01624 11 24780238 24782802 Rops11g01624 11 24780238 24782802 ECH