Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00587 ATGGTAGTCATCCCTCCAACTAGTAACCAATGGCCACAGAGTGAGATAGATGATCGTAATATCTCGATGGCTTCCTCTGGTAGGGTAATGGAAAAACCAAGTCATGAGCTTCTGCAACAACAAGCCCTCAAGTGTCCTCGTTGTGATTCATCAAACACAAAGTTCTGCTATTACAACAACTACAGCTTGACACAGCCAAGACACTTCTGCAAAGCCTGCAAACGATACTGGACGAAAGGTGGAACCCTGAGGAATGTTCCTGTAGGTGGAGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAACCTCATCCACTACTTCTTCTTCTTCTCCTAATGCCGCCACCGCCACCTCAAACGCTGCTTCACAACCCCAGATCGATGCTGTTTCAACCTCAAATCATATCAGTCCTTTGTTTTATGGGTTATCAAGTAATTCCTGTGATGTGAATCTTCAATTCCCAAGGTTCAATTCAAGAATCTCCAGTCCCGGGTATGATCTAAGGCTCCAGATGAATGCCCTTGGATTAGGTTTTATGTCAAGTGACGCCAATGATAATGGTTATAGGAATGGATTTACTTCAAGTAATACCCTTCTTTCAAATTATGATTCCATCTTTAGTTCTTCTTCAACTTGTACATCCACTGCTTCAGTTATGCCTTCCCTGCTGTTGCAACATAAATTCATGAATAGTGGAGTGAAAGATGGTCCAGGTAGCAACACTTTCCAGGGCTTAGCCCCACTAGAGCAGGTGCAAACGGCAAGTAATAGCAGTGAGGCAGGGATGGTGGCTTTAAAAGACGTGAAAGTAGAAGGACAAAATAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCGAGCATGTGGGCTTGTACGATCCATCACTTTACTGGAATACTGCAACAGCTATGGGTGTTTGGAATGATCAAGCTAATAATATTGGTCCATCAGTCACTTCTCTCATCTAG 969 0.4386 MVVIPPTSNQWPQSEIDDRNISMASSGRVMEKPSHELLQQQALKCPRCDSSNTKFCYYNNYSLTQPRHFCKACKRYWTKGGTLRNVPVGGGCRKNKRVKRPTSSTTSSSSPNAATATSNAASQPQIDAVSTSNHISPLFYGLSSNSCDVNLQFPRFNSRISSPGYDLRLQMNALGLGFMSSDANDNGYRNGFTSSNTLLSNYDSIFSSSSTCTSTASVMPSLLLQHKFMNSGVKDGPGSNTFQGLAPLEQVQTASNSSEAGMVALKDVKVEGQNRLEWNGACQNQIEHVGLYDPSLYWNTATAMGVWNDQANNIGPSVTSLI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00587 322 MobiDBLite consensus disorder prediction 101 125 - -
Rops11g00587 322 MobiDBLite consensus disorder prediction 88 125 - -
Rops11g00587 322 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Rops11g00587 322 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Rops11g00587 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 207 IPR045174 GO:0003700|GO:0006355
Rops11g00587 322 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00587 Rops-Chr11 8221382 8223601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00587 2 322 C2C2-Dof Transcription Factor Family AT1G28310 40.407 8.70e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops11g00587 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00587 - - gmx:778098 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00587 11 8221382 8223601 Rops11g00587 11 8221382 8223601 ECH