Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00526 ATGGGTTTGAGTTCTAAGAAGGTTTCTAATAGAGGGCTTGATTGGAACCAGACCTTGTTGCAAACACAAGACTTGGAGCTCCCAAAGCCTAGTCCTATGAGGAAACAACAGCAACAAACTCCACAATCAGAGCCTTTGAAGTGTCCAAGATGTGAATCTACTAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTACTGTAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCCGTTGGTGGTGGAAGGAAGAATAAGAGAGTCAAGAAATCAACAACTCCAACCTCTGCCACCACCACAGCCACCACTTCTATTAGTACCACTACCTCAAATGGCAATATGGATGGTGAATTGAGTGGCCAAATGACAATTCAAACTCCACAGCAAAGGCAGAATCTTCCTCCTCTTGCAGTCTGTGATCAGAAAAACATACCTTCCTCTCTTTATCAATCTCTGATTCTTCCACCTTCTTTATTGCCACAACAGAATCTGATGAGTACCACCGACTCAGAAGGTAAAGACTTTGGTATTGGTAATGGCATCTTTCTGAATTCAACTGTGCCTTTTCCTCAAAACCAAAGCCTTCTATTCCCCTTCTCAACCTCAAGCACTTTTGACACAAACACATGTGCAGTATCAACCTCTTTGGGATCATCCAATGTCTATCACTATGGTGATGAGTTTAAAATAATGGAGGAGCCAACCATCAACAGCATAATGCCCAGCACTAGTGGCACTAACACAAAGCCATGGGACATACCAGCAACAAGTACTGGCATGGAAATGCCAAACTATTGGAGTTGGGAGGATTTTGATTCATTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATACCAAACCATGA 909 0.4268 MGLSSKKVSNRGLDWNQTLLQTQDLELPKPSPMRKQQQQTPQSEPLKCPRCESTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPTSATTTATTSISTTTSNGNMDGELSGQMTIQTPQQRQNLPPLAVCDQKNIPSSLYQSLILPPSLLPQQNLMSTTDSEGKDFGIGNGIFLNSTVPFPQNQSLLFPFSTSSTFDTNTCAVSTSLGSSNVYHYGDEFKIMEEPTINSIMPSTSGTNTKPWDIPATSTGMEMPNYWSWEDFDSLVSTDLNVPWDDSDTKP* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00526 302 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Rops11g00526 302 MobiDBLite consensus disorder prediction 1 48 - -
Rops11g00526 302 MobiDBLite consensus disorder prediction 87 126 - -
Rops11g00526 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 200 IPR045174 GO:0003700|GO:0006355
Rops11g00526 302 MobiDBLite consensus disorder prediction 103 126 - -
Rops11g00526 302 MobiDBLite consensus disorder prediction 32 48 - -
Rops11g00526 302 MobiDBLite consensus disorder prediction 1 25 - -
Rops11g00526 302 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Rops11g00526 302 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00526 Rops-Chr11 7287568 7289463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00526 24 130 C2C2-Dof Transcription Factor Family AT5G60200 50.926 1.77e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops11g00526 zf-Dof 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00526 - - gmx:778119 417.157