Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02627 ATGCAAGGCCAAGAAGAAGTCATGAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCACACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTGAGTGCCAAACCCATGTCAAGAGCACTTGGATTCCAATGGATAGAAGGCGCCTGAAGGAGAAACAACCATCTCCAACTATCATTCCACACCACCTTCAGGGAGATATCCCTAAAAAGCACAAGCAGAACTCATATTCAGGTTTAGAGGAGTTCAAATTTCCAGCTGTTACGAATTCCATGGCTATATTTCGGTGCGTTCAGGTTCGTTCTACGGATGATACGGTTAATGAAATCGCGTATCAAACATCCGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGCCCTGACCAAAGCTTCTATGCTAGGGGTGACAGTTCTACAGGCCTTCTTGATCAGCAGCAAAATCTTAGTCTCATCAATGCTTCAATCCACACTCGAGATGGTGCAACTATGGCTCCATTATCAGCCTCTGTAGCTCATGATGATCCTTTTTTTCCTCCACCACCATATCCCTTTCCCTTTGCTTCATTCAGGCCTGGTATGTCATATTTCTCAAACCTAAAATGA 627 0.4418 MQGQEEVMKCQDCGNQAKKECSHSRCRTCCKNKGFECQTHVKSTWIPMDRRRLKEKQPSPTIIPHHLQGDIPKKHKQNSYSGLEEFKFPAVTNSMAIFRCVQVRSTDDTVNEIAYQTSVNIGGHVFSGLLYDQGPDQSFYARGDSSTGLLDQQQNLSLINASIHTRDGATMAPLSASVAHDDPFFPPPPYPFPFASFRPGMSYFSNLK* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02627 208 Pfam Domain of unknown function (DUF702) 8 136 - -
Rops10g02627 208 NCBIfam LRP1 C-terminal domain 87 135 IPR006511 -
Rops10g02627 208 NCBIfam putative zinc finger domain, LRP1 type 9 51 IPR006510 -
Rops10g02627 208 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 171 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02627 Rops-Chr10 45509388 45510326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops10g02627 DUF702 2.8e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02627 10 45509388 45510326 Rops10g02627 10 45509388 45510326 ECH
Rops10g02627 10 45509388 45510326 Rops3g00510 3 6493891 6495001 ECH
Rops10g02431 10 42540016 42541421 Rops10g02627 10 45509388 45510326 ECH
Rops3g00510 3 6493891 6495001 Rops10g02627 10 45509388 45510326 ECH
Rops10g02627 10 45509388 45510326 Rops1g01604 1 34232711 34235045 ECH