Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02436 ATGAAGATCCAGTGTGATGTGTGTAACAAACACGAGGCTTCTTTATTTTGCACCGCCGATGAAGCTGCCTTATGTGATTCCTGTGACCACCGTGTCCACCATGCTAACAAGCTCGCCTACAAACACCAACGTTTCACTCTTAATCACCCTTCTGCAGAACATTTCCCTGTCTGTGATGTTTGCACGGAGAGAAGGGCTTATGTTTTTTGTCAGCAAGATAGAGCGATTTTGTGCAAAGAGTGTGACTTGCCTATTCATTCTGCAAACGAACATACCAAGAAGCATAATAGGTTTCTTCTAACTGGGATTAAGCTCTCTGCTTCTGCCACCCTTTATTCATCACTACCCTCTTCCAATTCCAAGTCTGTGAAGAAAAATCCTGTGATTGATTCTTCTTCACAACAACCTTTGATGGATAAGACTTCTTCTTCAACAGTATCAGTGCCTCCCACCATCAACAAGGCTAATGAAGAAGCTGGTTTCACAAGTAGCATATCTGAGTACTTGATAAATACTATCCCGGGTTGGCAATTTGAAGATTTGCTCAATTCCCCTTCTCTTCCTTTTGGTTTCTCTAAGAATGGTGATGATATGGTGTCACTGGTGAATGGTGATGTTGGGGGAAATATGTTTTCTTTCTCACCACCCGAGAGCATTGGTGGGATCTGGGTTCCTCAAGCACCATCTTCTCTATATTCTTCTTCACAATTGGATCAGCAGATTGGGTATAGAGAGACCAAGGAAGCCAATGGCAGATCAAGGTTGGGGGATGATAATTTCATAGTTCCACAGATGACCCCTCACAATGTTTCCTCCAAGAGATCCAGACATCAATTGTAA 840 0.4286 MKIQCDVCNKHEASLFCTADEAALCDSCDHRVHHANKLAYKHQRFTLNHPSAEHFPVCDVCTERRAYVFCQQDRAILCKECDLPIHSANEHTKKHNRFLLTGIKLSASATLYSSLPSSNSKSVKKNPVIDSSSQQPLMDKTSSSTVSVPPTINKANEEAGFTSSISEYLINTIPGWQFEDLLNSPSLPFGFSKNGDDMVSLVNGDVGGNMFSFSPPESIGGIWVPQAPSSLYSSSQLDQQIGYRETKEANGRSRLGDDNFIVPQMTPHNVSSKRSRHQL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02436 279 CDD Bbox1_BBX-like 5 47 - -
Rops10g02436 279 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops10g02436 279 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Rops10g02436 279 CDD Bbox1_BBX-like 57 100 - -
Rops10g02436 279 MobiDBLite consensus disorder prediction 114 151 - -
Rops10g02436 279 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Rops10g02436 279 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Rops10g02436 279 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Rops10g02436 279 Gene3D Classic Zinc Finger 1 100 - -
Rops10g02436 279 FunFam B-box zinc finger protein 21 1 98 - -
Rops10g02436 279 SMART bboxneu5 53 100 IPR000315 GO:0008270
Rops10g02436 279 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02436 Rops-Chr10 42620734 42622042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops10g02436 zf-B_box 1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02436 10 42620734 42622042 Rops10g02436 10 42620734 42622042 ECH
Rops9g02641 9 49530400 49531856 Rops10g02436 10 42620734 42622042 PCT