Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02431 ATGGCTGGGTTCTTCTCTCTAGGCGGAAGGGGAGGCCCACAAAACAAGGCAGAAGAAGGAGCAGAAAAAGAAGATAATAATAACAGTAGCAACAACTTATTATTGTTCAGAAACGAGGAGATCTACAACAAGGGGTTTGAGATATGGCCACAGTACTATCACCCAAACCAAAACTTGAACAATTACTATGCATTTGGGGTGGGTCCTAGTCGCAGGAATTGCTCCAACGTTAACGAGGACGATGTATCTGATGATTCTAGGAGTTTTGGTTTAACTGTAATGAGGTCTGGAGGTACTGGAAGTGGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGTCCACATCTCAGATGCAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCCGCAGCCAAACGCCGTGAACGACAACAACAACTCGCTGCGTTGCAGCAGCAACAACAACAATTGCGTAGAGAGAATCCTAATCGTCACAGAGACACTCAAGGTGTAGGCTCTCTTCCGCCACCCATCACTACTACAGGGTTGGAGCTGGGACAATTCCCACATGAAGTGAACTCTTCAGCGGTGTTTCGGTGTGTGAGGGTTAGCGCAGTGGACACCCCAGAGGAGCAATGCGCGTATCAAACAGCTGTCAACATTGGAGGCCATGTGTTCAAGGGAATTCTCTATGATCAAGGAGCCGAAAGTTCTTACACCAGCACAGCTGCTGAGGGTTCTTCAGGTGGAGGTGAAGCTCAACAACTTAGTTTCATGACCGCAGCAACAACGGCCACAACCAGTGGGAACCCATTTGACCCTTCACTTTACCCAGCCTCGTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGACCCTAA 909 0.4862 MAGFFSLGGRGGPQNKAEEGAEKEDNNNSSNNLLLFRNEEIYNKGFEIWPQYYHPNQNLNNYYAFGVGPSRRNCSNVNEDDVSDDSRSFGLTVMRSGGTGSGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQQLRRENPNRHRDTQGVGSLPPPITTTGLELGQFPHEVNSSAVFRCVRVSAVDTPEEQCAYQTAVNIGGHVFKGILYDQGAESSYTSTAAEGSSGGGEAQQLSFMTAATTATTSGNPFDPSLYPASLNAFMAGTQFFPPPRP* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02431 302 Pfam Domain of unknown function (DUF702) 102 242 - -
Rops10g02431 302 NCBIfam LRP1 C-terminal domain 193 240 IPR006511 -
Rops10g02431 302 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Rops10g02431 302 MobiDBLite consensus disorder prediction 159 182 - -
Rops10g02431 302 Coils Coil 146 166 - -
Rops10g02431 302 MobiDBLite consensus disorder prediction 1 30 - -
Rops10g02431 302 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 288 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02431 Rops-Chr10 42540016 42541421 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops10g02431 DUF702 9.2e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02431 10 42540016 42541421 Rops1g01604 1 34232711 34235045 ECH
Rops10g02431 10 42540016 42541421 Rops10g02627 10 45509388 45510326 ECH
Rops10g02431 10 42540016 42541421 Rops3g00510 3 6493891 6495001 ECH
Rops10g02431 10 42540016 42541421 Rops10g02431 10 42540016 42541421 ECH
Rops9g02642 9 49572315 49574181 Rops10g02431 10 42540016 42541421 PCT