LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02421	ATGCTGAAGTCAGGCATAGGAACTGAGGAGCAAAAGCAGTTGAAGAAGCCAGCCCAGGCCAAATCCAGAAAGGGTTGTATGAGAGGTAAAGGAGGCCCTGAAAATGCAAGTTGCACCTACAAGGGTGTGAGACAGAGAACTTGGGGAAAATGGGTTTCTGAAATTCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGGACATTTGAGACGTCCCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGCAAGCTTTATGGCTCAGAGGCTAAGCTCAATCTGCCAGGGCTCTCTGTATCACAGTGTCCACCATCTTCTTCTTCTGCTGCCATTCATCACAACATGGACATGGCCACATGTTCTAGTTTCAATACCAACCCAGCAGTTTCCATGGTTTCTCAGCAAGTTGGAGTTGGACCAATATACACCGGTGACTCCATCGTGTCTCTTCCTTTAGATACAAAACCTAAGCCAGCTGAATCCTATGCAAAGCCCATGGAGAATGAAGGAGTTTCTTTTCCTCCAATGAATGAGGGTTTGTCAGTTTTAGATGATTCCATCTGGGCAGAAGCTGCTATGTCCCTAGATTTCCCTATGATTGCAGAGTCTGGGATTTACACAACAGGGAACTTGGCAGATGTGGGAATTTGGGACTCTCAGAGTCCATGGTGTATATAA	681	0.4699	MLKSGIGTEEQKQLKKPAQAKSRKGCMRGKGGPENASCTYKGVRQRTWGKWVSEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPGLSVSQCPPSSSSAAIHHNMDMATCSSFNTNPAVSMVSQQVGVGPIYTGDSIVSLPLDTKPKPAESYAKPMENEGVSFPPMNEGLSVLDDSIWAEAAMSLDFPMIAESGIYTTGNLADVGIWDSQSPWCI*	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g02421	226	CDD	AP2	38	96	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Rops10g02421	226	MobiDBLite	consensus disorder prediction	1	33	-	-
	Rops10g02421	226	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Rops10g02421	226	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Rops10g02421	226	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Rops10g02421	226	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	13	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g02421	Rops-Chr10	42411760	42412440	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Rops10g02421		AP2	3.6e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g02421	10	42411760	42412440	Rops10g02421	10	42411760	42412440	ECH
	Rops9g02650	9	49683165	49683896	Rops10g02421	10	42411760	42412440	PCT