Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02376 ATGGCCTCAAGCTCAGTTTGGACAGCAAAGCAGAACAAAAGATTTGAGAATGCTTTGGCCATTTTTGACAAGGACACCCCAGATCGATGGCAGAAACTGGCAAGGGCCGTTGGAGGGAAGACAGTGGAGGAAGTGAAAATGCATTATGAGAAGCTTGTGGAAGATGTGAGGCAGATCGAGGAAGGGCATGTGCCCCTGCCCAATTACAGAAATGTTGCAACTGTAGGAGGCAGAGGTTACAACTTACAATTACATGGGTGA 261 0.4751 MASSSVWTAKQNKRFENALAIFDKDTPDRWQKLARAVGGKTVEEVKMHYEKLVEDVRQIEEGHVPLPNYRNVATVGGRGYNLQLHG* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02376 86 SMART sant 3 55 IPR001005 -
Rops10g02376 86 FunFam Transcription factor SRM1 1 66 - -
Rops10g02376 86 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Rops10g02376 86 Gene3D - 1 66 - -
Rops10g02376 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Rops10g02376 86 CDD SANT 7 53 IPR001005 -
Rops10g02376 86 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Rops10g02376 86 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02376 Rops-Chr10 41895248 41895558 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g02376 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02376 10 41895248 41895558 Rops10g02376 10 41895248 41895558 ECH
Rops9g02324 9 42780358 42781402 Rops10g02376 10 41895248 41895558 PCT