Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02042 ATGTTGCAATTCCCATCTTCTTCTCCTGTGCCATTGCCAACCCCAATGGAGAGATCAACTTCAAGGTGGAAACCCAACATTGAGATAGCTCCCAATTGTCCTCGTTGTGCTTCCACCAACACCAAATTCTGTTACTACAATAACTACAGCTTGTCACAGCCCAGATACTTATGCAAAGGTTGCAGACGTTACTGGACCAAAGGTGGTTCACTTAGGAACGTTCCCGTTGGAGGTGGCTGCCGCAAAAACCGCCGCGGAAAATCCACGAGGAACCAACAAAGTGAACGCCTTTCCACGAATAGTTTCAATGGGAATTATGGTTCTGATGATAGAATAGAATCGTCCATAGGTGATGGTCATCAAACTAGTCAAACCAATGGGTCTGTTGATATAGACATGGCTGTTATGTTCACCAAATTCTTGAACCAAAACCAGAGCTCTGGTGAGGAATTTGAGAGTGGGTCATCGTCTTCTAACGTTAACTTGTCAAATTCTTTGACCCCGGAAAGTGTTGTTGAAACTGAGAATGATGCAGTGGTTCAGCCTCAGAAGAAGCCTCTAGAACTAGAAGAGATGAGGATTCAGGATTTTGGAGTGGATCAGGAATTGAGTTTGAGTGGGATTGATGAGTTTTTGGGTGTGGGTGTTGATGATGATGATGTTTTTCTTTGGTCTGATGATGTTACCATGTCCTCTTCCATTACATGGCAACCACCACCAACAACCATGATGCAAATGCAGTTTCAGGAATTGGAGTACTCAATGCCCATTAATTCAACTTCTACCGTGAATTTAATAAGCGACAGTTGGAGTTCTTGGAGTTCAGTTGATCTTTCGACCATGGAAGTCTTCTCATCAACACCTTAA 867 0.4337 MLQFPSSSPVPLPTPMERSTSRWKPNIEIAPNCPRCASTNTKFCYYNNYSLSQPRYLCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSTRNQQSERLSTNSFNGNYGSDDRIESSIGDGHQTSQTNGSVDIDMAVMFTKFLNQNQSSGEEFESGSSSSNVNLSNSLTPESVVETENDAVVQPQKKPLELEEMRIQDFGVDQELSLSGIDEFLGVGVDDDDVFLWSDDVTMSSSITWQPPPTTMMQMQFQELEYSMPINSTSTVNLISDSWSSWSSVDLSTMEVFSSTP* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02042 288 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Rops10g02042 288 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Rops10g02042 288 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g02042 288 MobiDBLite consensus disorder prediction 146 181 - -
Rops10g02042 288 MobiDBLite consensus disorder prediction 92 110 - -
Rops10g02042 288 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g02042 288 MobiDBLite consensus disorder prediction 146 177 - -
Rops10g02042 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 179 IPR045174 GO:0003700|GO:0006355
Rops10g02042 288 MobiDBLite consensus disorder prediction 75 125 - -
Rops10g02042 288 Pfam Dof domain, zinc finger 31 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02042 Rops-Chr10 37041041 37041907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02042 16 142 C2C2-Dof Transcription Factor Family AT3G52440 54.015 2.76e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops10g02042 zf-Dof 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02042 - - mtr:11416134 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02042 10 37041041 37041907 Rops10g02042 10 37041041 37041907 ECH