Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01888 ATGCAAAACACTTTGTTCCTCTTGTTATTTTTTCAGGGTTTGATAGCTGCAAGCTGTAAATCCACCATAGAGCCATGCACAAACTCAGACTCTTGCAACGCTCTTCTTGGTTACACACTTTACACGGACCTCAAGGTCTCAGAGGTGGCTTCACTCTTCCAAATCGACCCTATCTCTCTTCTCACAGCCAATGCCATTGATATTTCCTACCCTGACGTGGAACACCACATTCTTCCTTCAAATCTTTACCTCAAAATCCCTATTTCTTGTTCCTGTGTTGATGGGATTCGTAAATCTGTGTCTACCCATTACAAGACACGTCCTTCTGATACTCTTTCATCTATTGCTGACTCAATCTATGGGGGTTTGGTCTCTGATGACCAGTTAAGGGAAGCAAATTCCATAACTGACCCTTCAGTGCTTGATGTGGGACAGAACCTTGTGGTGCCTCTTCCTTGCACTTGCTTCAATGGTTCTGATAACTCTTTGCCTGCAATTTACCTCTCCTATGTGGTTCAACCCGTTGATACTTTGCCTTCAATTGCTGCAAGATATTTCACTACTCTTACTGATTTGATGAATGTCAATGCCATGGGGAGTACAGCTATCACTGATGGTGATATTCTCGCTATTCCAATACCGGCTTGTGCTTCAAATTTTCCAAAATATTCTTCTGATTTTGGGTTGCTTGTCCCTAATGGAAGTTATGCCATTGCAGCAGGCCACTGTGTGCAGTGTAGCTGTGGACCACGAAACCTAAATTTGTACTGTATGCCAGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGTAAAAGCAGCAATCTTATGCTCGGGAATGTTACAGTGCAACAGGGTAGTGGTGGCTGCAATGTTACTTCTTGCAATTATGATGGCATTGCTAATGGCACCATACTAACAACGTTGTCCTCATCTCTTCAGCCTCGATGTCCAGGGCCACAGGAATTTCCTCCTCTTATTGCCCCACCAACAGCTGTTGAGAGGGAATCAATATTTGGACCAGCACCAGCACCATCACCACAGTCGGATGGAACTGGTCTAACATCACCCAAATCTCCATTGGTACCTGCAACAGGACTTCCAGGATTCTCTCCTGCAAATGGCCCCGTTAGTGGGATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCCATTTTGACATCTGCACTTGTGTTATTACTTGTCAAGTTGATGATCCCTGTGGCATTGTAA 1245 0.4466 MQNTLFLLLFFQGLIAASCKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSNLYLKIPISCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSDDQLREANSITDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDTLPSIAARYFTTLTDLMNVNAMGSTAITDGDILAIPIPACASNFPKYSSDFGLLVPNGSYAIAAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQGSGGCNVTSCNYDGIANGTILTTLSSSLQPRCPGPQEFPPLIAPPTAVERESIFGPAPAPSPQSDGTGLTSPKSPLVPATGLPGFSPANGPVSGISSGASAACSLVKPLPILTSALVLLLVKLMIPVAL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01888 414 MobiDBLite consensus disorder prediction 337 367 - -
Rops10g01888 414 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 321 - -
Rops10g01888 414 CDD LysM 102 149 IPR018392 -
Rops10g01888 414 Pfam LysM domain 104 150 IPR018392 -
Rops10g01888 414 Pfam LysM domain 170 212 IPR018392 -
Rops10g01888 414 SUPERFAMILY LysM domain 168 213 IPR036779 -
Rops10g01888 414 ProSiteProfiles LysM domain profile. 168 211 IPR018392 -
Rops10g01888 414 CDD LysM 169 211 IPR018392 -
Rops10g01888 414 ProSiteProfiles LysM domain profile. 102 149 IPR018392 -
Rops10g01888 414 Gene3D LysM domain 159 220 IPR036779 -
Rops10g01888 414 Gene3D LysM domain 96 156 IPR036779 -
Rops10g01888 414 SMART LysM_2 169 212 IPR018392 -
Rops10g01888 414 SMART LysM_2 103 150 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01888 7 389 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.309 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01888 - - gmx:100808966 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01888 10 34934381 34937093 Rops10g01888 10 34934381 34937093 ECH