Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01167 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTTGAAGAGCCACCACAGTCGCCGCCGGAGTCCCTTGCAACAAGGGATTTCTCAGCTAGTGGACTTTCTTCAAGGACTGGTGGGGATTGGGAATCCAAATTTGATGAAACCCAAGTAGATGAAGTTGAATCTACTCTGAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCTAGGGCTTTGCTTGGGAGGCTTGAATACCAAAGAGGAAACTTTGAAGCTGCCCTTCAAGTATTTCAAGGTATAGATATCAAGAGTTTGACCCCAAGGATGATCAAGGCAATTGCTGAAAGAACCAAGCAAAGAAAACCACGTCCCAAGGCAGACATTGTGATTCCAAATGTGATGTCATTGCATTCAGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAATGTCCTTAGAGGAACTTGGGCGATCCATTGATGCTGCAAAGGAGTGCAGAATAATTCTGGATACAGTTGAATCTGCCCTTCCTGATGGACTGCCTGAGGGTATTGGCGAAGACTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGGAGTTGCTTCCAAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACCGCATATCGTCGTGCTCTGGTCAAGCCATGGAATTTGGAGCAACGAAGGTTGGCTGGTGTACAGAAAGATTTAGCTACAGTGCTACTCTATGGTGGTGTTGAAGTAAACCTACCCTCTCAGTTGCAAGTGTGGGGTCAGACAACACCCAAGAATAACATTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGCAAGATGGCAATTCAGGAAATAGACTGGGATGCTGAAATAATGGATCACCTTATGTTTGCACTTTCAGTTACTGGGATGTTTGGGTCATTGGCAGATCATGTAGAGCAGATCCTTCCGGGTATCTATAATCGAGTTGAGAGGTGGTACTTTCTTGCTCTCTGTTATAGTGCAGCAGGACAGGACGAAACAGCACTGAACCTTTTGAAGAAGGCTTGTGGTAGTTCTGAAGCAAAGCGTAGACCCCATTTTCCTTCATTCTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTCGCCATGCTCATGATGGCATTAACTTTTCACGTGCAATTATTGACCTAGCTAAGCACCGAAATGAGCATTTTTTGGGTCAAGGTCGCAAATTTCTTGGTGTATGCTATGGTGCTGCAGCTAGACTTTCTGTACAGGATTATGAAAGAAGTATATTTCAAAGAGAGTCTTTGAACTTTCTAAACTGTGCTGCTGTAAGTGGAAATGGTGACCCAGAAGTGATATTCAGCCTTGGACTGGAAAATGCGATTCAAAGGAATCTAGATGCAGCTTATGACAATATAATGATGTACTCAGACATGACTGTTGGCAGTTCAGGAAGAGGTTTGCAGCTTTTGGCACTCATAGTATCTGCACAGCAGCGGTTTAAGGATGCTGAAACTGTAGTTGATTTCGCTTTAGATGAGGCTGGGAGGATGGATCAGCTAGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCACAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAGTCTTGCTAGCACTAATTCAAGCAAAAAAAGAACTTTGGCTTCAAGATAAGAACTTTGATGAAGTAAAAGCATTCAGGAATGAGGCATTAAAAGAAAGGAAGTTGGAAATGGAAGCGTGGCAGGATTTGGCTACCATTTATGCCGATGTCGGTTCCTTGCTTGATGCAAAGGCTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTTTGTCCAAGAAGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCAGCTGCAGAATTGTTGCTGAAACTTGGAATGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCCACAAACCATGATGCATGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCGTTACAGCAAGCAGCAGATTTCTTTCAAGCTGCATATGAACTGAAGCTTTCGGCTCCGGTGGAAAAATTTGAGTGA 2154 0.4253 MLCACSGEQFKFEEPPQSPPESLATRDFSASGLSSRTGGDWESKFDETQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFEAALQVFQGIDIKSLTPRMIKAIAERTKQRKPRPKADIVIPNVMSLHSVSLLLEAILLKAMSLEELGRSIDAAKECRIILDTVESALPDGLPEGIGEDCKLQEMFHRALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEQRRLAGVQKDLATVLLYGGVEVNLPSQLQVWGQTTPKNNIEEAILLLLILMSKMAIQEIDWDAEIMDHLMFALSVTGMFGSLADHVEQILPGIYNRVERWYFLALCYSAAGQDETALNLLKKACGSSEAKRRPHFPSFLLGAKLCSQDPRHAHDGINFSRAIIDLAKHRNEHFLGQGRKFLGVCYGAAARLSVQDYERSIFQRESLNFLNCAAVSGNGDPEVIFSLGLENAIQRNLDAAYDNIMMYSDMTVGSSGRGLQLLALIVSAQQRFKDAETVVDFALDEAGRMDQLELLRLKAVLQIAQQQPKQAIETYRVLLALIQAKKELWLQDKNFDEVKAFRNEALKERKLEMEAWQDLATIYADVGSLLDAKACVDKAQLIEFFCPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISAAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVEKFE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01167 717 SUPERFAMILY TPR-like 48 344 IPR011990 GO:0005515
Rops10g01167 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Rops10g01167 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Rops10g01167 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Rops10g01167 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Rops10g01167 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Rops10g01167 717 SUPERFAMILY TPR-like 551 708 IPR011990 GO:0005515
Rops10g01167 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Rops10g01167 717 MobiDBLite consensus disorder prediction 6 47 - -
Rops10g01167 717 MobiDBLite consensus disorder prediction 22 38 - -
Rops10g01167 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Rops10g01167 717 SUPERFAMILY TPR-like 202 601 IPR011990 GO:0005515
Rops10g01167 717 Gene3D Tetratricopeptide repeat domain 42 346 IPR011990 GO:0005515
Rops10g01167 717 Gene3D Tetratricopeptide repeat domain 425 712 IPR011990 GO:0005515
Rops10g01167 717 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01167 Rops-Chr10 23856641 23860607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01167 1 716 Calmodulin-binding Proteins AT1G27460 59.388 0.0 850
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01167 10 23856641 23860607 Rops10g01167 10 23856641 23860607 ECH
Rops9g02142 9 39340523 39345171 Rops10g01167 10 23856641 23860607 PCT