Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01157 ATGGCTCTGGAAGCTCTCAAATCACCAACCACCGCCACCCCATCATTCAGTCTCTACGAGGAAGCAAATCTCAGCTACCTTGAGACACCATGGGCGAAGCGAAAACGTTCCAAGCGTAGCCGCATGGACCAACAACAACACCAACCTTCATGCACTGAGGAAGAGTACCTTGCTCTCTGCCTTATCATGCTTGCTCGTGGCGGTGGAAACGACACCGTTTCGATGACAAAGCCTGTTGCTTCTGATAACGAGTCGGCGCCGCTAACCACCACCACCACCGCTAAGCTCAGTTACAAATGCTCTGTTTGTGACAAAGCCTTCTCATCTTACCAAGCACTTGGTGGACACAAGGCCAGCCACCGGAAACACGCTGGCGGTGTCGTTGCTGAAGATCACTCCACCTCCTCTGCCGTCACCACCAGTTCCGCATCCAACGGTGGAGGTAAGAGCCACCGGTGTTCCATCTGTCACAAGACCTTCCCCACAGGACAGGCCTTGGGAGGACACAAGCGTTGCCACTACGAAGGCGGTGCCGGTGGAAGCAGCGCCGTCACTGCTTCCGAAGGGGTGGGGTCCACTCATAGCCACCCCCGTGACTTCGATCTCAACCTCCCGGCTTTTCCGGACTTTTCAACCAAGTTCTTCGGGGAAGACGAGGTTTCCAGTCCTCTACCTGTGAAGAAGCCTCGTCTTTTGACTATTCCAAAGATTGAAATCCCTCAATACTACTGA 732 0.5423 MALEALKSPTTATPSFSLYEEANLSYLETPWAKRKRSKRSRMDQQQHQPSCTEEEYLALCLIMLARGGGNDTVSMTKPVASDNESAPLTTTTTAKLSYKCSVCDKAFSSYQALGGHKASHRKHAGGVVAEDHSTSSAVTTSSASNGGGKSHRCSICHKTFPTGQALGGHKRCHYEGGAGGSSAVTASEGVGSTHSHPRDFDLNLPAFPDFSTKFFGEDEVSSPLPVKKPRLLTIPKIEIPQYY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01157 243 Gene3D Classic Zinc Finger 95 173 - -
Rops10g01157 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Rops10g01157 243 Pfam C2H2-type zinc finger 98 122 - -
Rops10g01157 243 Pfam C2H2-type zinc finger 151 174 - -
Rops10g01157 243 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Rops10g01157 243 SMART c2h2final6 98 120 IPR013087 -
Rops10g01157 243 SMART c2h2final6 151 173 IPR013087 -
Rops10g01157 243 SUPERFAMILY beta-beta-alpha zinc fingers 98 173 IPR036236 -
Rops10g01157 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 206 IPR044653 GO:0003700
Rops10g01157 243 MobiDBLite consensus disorder prediction 128 150 - -
Rops10g01157 243 MobiDBLite consensus disorder prediction 132 149 - -
Rops10g01157 243 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Rops10g01157 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01157 Rops-Chr10 23721542 23722478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01157 1 239 C2H2 Transcription Factor Family AT1G27730 52.846 7.36e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops10g01157 zf-C2H2_6 7.8e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01157 10 23721542 23722478 Rops10g01157 10 23721542 23722478 ECH
Rops9g02158 9 39561040 39562036 Rops10g01157 10 23721542 23722478 PCT