Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01123 ATGGGTGGTTGGGCTATCGCAGTTCACGGTGGAGCTGGTGTGGACCCTAATCTTCCACCACAGCGTCAGGAAGAAGCGAAACAGCTCCTTACTCGTTGTCTCAATCTTGGCATCTCTGCCCTTCGTTCCAATGCTTCTGCTATCGATGTCGTTGAACTTGTCGTCAGGGAACTTGAAACGGATCCCCTGTTCAACTCTGGGCGTGGATCTGCCCTGACAGAAAAAGGAACAGTGGAAATGGAGGCTAGCATCATGGATGGGACCAAGAGAAGATGCGGCGCCGTTTCTGGCCTTACCACCGTGAAAAACCCCATCTCTCTAGCTCGTCTTGTCATGGACAAATCCCCTCATTCCTACCTCGCCTTCTCCGGCGCTGAAGATTTCGCCAGGCAACAGGGCGTGGAGATTGTGGAGAATGAATACTTCATCACTCCTGATAATGTTGATATGCTGAAACTGGCAAAGGAATCAAATAGTATCGTGTTCGACTATAGGATGCCAGCGGGTAAATACGACACGTGCGGCGCAGGAGTTGAGAGTCCATTTCAAATGAATGGACTGCCAATCAGCGTGTACGCGCCCGAAACGGTTGGGTGCGTGGTGGTGGATGGTGAGGGAAGGTGTGCGGCTGCCACGTCAACAGGGGGACTGATGAACAAGATGAGCGGTAGGATTGGTGACTCACCTCTCATTGGTGCTGGTACCTACGCATGTGAGGTTTGTGGGGTCTCTTGCACCGGTGAAGGTGAGGCTATCATTCGTGGGACCCTTGCGCGTGAGGTGGCGGCGGTCATGGAGTACAAAGGTTTGGGACTTCAGCAGGCTGTGGATTTTGTCATCAAGCATCGTCTTGATGAAGGGAAGGCTGGTCTCATTGCTGTGTCTAATACTGGTGAAGTGGGTTATGGGTTTAATTGTAATGGCATGTTCAGGGGTTGTGCCACTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTGA 981 0.5199 MGGWAIAVHGGAGVDPNLPPQRQEEAKQLLTRCLNLGISALRSNASAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGTKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFSGAEDFARQQGVEIVENEYFITPDNVDMLKLAKESNSIVFDYRMPAGKYDTCGAGVESPFQMNGLPISVYAPETVGCVVVDGEGRCAAATSTGGLMNKMSGRIGDSPLIGAGTYACEVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQQAVDFVIKHRLDEGKAGLIAVSNTGEVGYGFNCNGMFRGCATEDGFMEVGIWE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01123 326 Gene3D (Glycosyl)asparaginase 196 326 - -
Rops10g01123 326 CDD Asparaginase_2 5 318 - -
Rops10g01123 326 Pfam Asparaginase 4 325 IPR000246 GO:0016787
Rops10g01123 326 PANTHER L-ASPARAGINASE 4 312 IPR000246 GO:0016787
Rops10g01123 326 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 323 IPR029055 -
Rops10g01123 326 FunFam Isoaspartyl peptidase/L-asparaginase 196 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01123 Rops-Chr10 23312475 23313990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01123 6 286 Miscellaneous Gene Families AT4G00590 27.063 2.80e-18 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01123 10 23312475 23313990 Rops10g01123 10 23312475 23313990 ECH
Rops9g02181 9 39891150 39893352 Rops10g01123 10 23312475 23313990 PCT