Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01122 ATGGCTCACCACCACCATCATCAACAACAACCTGAGACACATGACAGCCAGAAATTCCTTCTAGATGCCCTGTACTGCTCTGAAGAGCATTGGGAGGAACAAGATGAATTTGATGATGAGTACAGTGGTGATTCCCTAAGTGCCAATACTAGTACTAGCACAATAATAAACTCCCTTCCTTTGTTGCTTGAAAATGACATGTTCTGTGATGATGAAGAGTTAACATCACTGCTTTCCAAAGAACAACACAACCCACTATTCACCTCCCTCCAAAGCAACCCTGAGTTAGAGGGTGCTCGCAGGGAAGCTCTGGAGTGGATGCTGAAAGTGAATGCCCATTATTCCTTCTCTGCTCTCACCGCTGTTCTTGCTGTCAACTACCTTGACAGGTTCCTTTTCAGCTTTCGTTTTCAGAATGGCAAGCCATGGATGACTCAGCTTGCTGCTGTGGCTTGTCTCTCTCTTGCTGCTAAGGTGGAAGAGACCCAAGTTCCCCTTTTGCTAGACCTCCAAGTGGAGGACAGTAGATACTTGTTTGAAGCCAAGGCGATTAAAAGGATGGAAATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAATCCACCAACCCCTCTCTCTTTTATTGATTATATCATTAGAAGACTTGGATTGAAAGATCATCTCTGTTGGGAGTTCCTAAGAAGGTGCGAGGGTGTTCTTCTCTCTGTCATCGGAGATTCTAGATTTATGAGTTACCTACCTTCTGTGTTGGCAACTGCTACAATGATGCTTGTTGTCAATAGCGTGGAGCCTTCTCTAGGAGTTGAATATCAAAGCCAGATCCTTGGTATTCTTGGAATCAACAAGGACAAGGTGGATGAATGTTGTAAGCTTATGTTGGAACTGTGGTCAGGGTACGACCAGGGGAAGCAAAAGCAATGCATCAAGCGCAAGTTTGGGTCCATTCCTGGTAGCCCAAATGGCGTAATGGATGTGTCTTTTAGCTCTGATAGCTCCAATGACTCATGGGCGGTAGCTGCTTCTGTCTCATCCTCACCAGAGCCTCTATCTAAGAAGACTAGGACTCAAGACCAGCTTCTACTAAACCGTTCCAGTTCAGATTTTCTCAGCATTCCACGCTAG 1122 0.4528 MAHHHHHQQQPETHDSQKFLLDALYCSEEHWEEQDEFDDEYSGDSLSANTSTSTIINSLPLLLENDMFCDDEELTSLLSKEQHNPLFTSLQSNPELEGARREALEWMLKVNAHYSFSALTAVLAVNYLDRFLFSFRFQNGKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAKAIKRMEILVLSTLGWKMNPPTPLSFIDYIIRRLGLKDHLCWEFLRRCEGVLLSVIGDSRFMSYLPSVLATATMMLVVNSVEPSLGVEYQSQILGILGINKDKVDECCKLMLELWSGYDQGKQKQCIKRKFGSIPGSPNGVMDVSFSSDSSNDSWAVAASVSSSPEPLSKKTRTQDQLLLNRSSSDFLSIPR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01122 373 FunFam D3-type cyclin 93 200 - -
Rops10g01122 373 SUPERFAMILY Cyclin-like 203 312 IPR036915 -
Rops10g01122 373 PANTHER CYCLINS 52 300 IPR039361 -
Rops10g01122 373 SMART Cyclin_C_2 202 331 IPR004367 -
Rops10g01122 373 SUPERFAMILY Cyclin-like 69 200 IPR036915 -
Rops10g01122 373 FunFam CYCLIN D32 201 290 - -
Rops10g01122 373 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Rops10g01122 373 Gene3D - 86 200 - -
Rops10g01122 373 Pfam Cyclin, C-terminal domain 202 328 IPR004367 -
Rops10g01122 373 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
Rops10g01122 373 Gene3D - 201 290 - -
Rops10g01122 373 SMART cyclin_7 105 193 IPR013763 -
Rops10g01122 373 CDD CYCLIN_AtCycD-like_rpt2 203 292 - -
Rops10g01122 373 Pfam Cyclin, N-terminal domain 85 200 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01122 Rops-Chr10 23274087 23276015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01122 20 358 Core Cell Cycle Gene Families AT5G67260 52.161 1.82e-100 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01122 10 23274087 23276015 Rops1g01818 1 37415035 37416545 ECH
Rops10g01122 10 23274087 23276015 Rops2g04491 2 82095073 82096888 ECH
Rops10g01122 10 23274087 23276015 Rops6g03152 6 55006850 55008410 ECH
Rops10g01122 10 23274087 23276015 Rops10g01122 10 23274087 23276015 ECH
Rops9g02182 9 39938520 39940150 Rops10g01122 10 23274087 23276015 PCT