Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01099 ATGCAAGGGCAGAGAGGTACAATTGGGTCCATGTCTGAAACCTTAGAATTTGATTGTGGATCTACATCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGAATAATGTGCGGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATAAACCAATCTTATATGAATTCAGTAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCAAGTAATACACCAAATGAGGTTAACACTAATGAGCAGAAAAGAGAACTTGAATGGGCATCATCCATAAGTGCTGGTCCAAGACTAGAAGACAGGGGCCGTGAACCAACCAATGCTCTTTCACTGGACAGTGTCAATACAGGTCCTATGTATGTGCACAACTCCAATTCTCATTTGATTTCCCAGAATCTCAACTTAAATGCAGGTTTAGCAGACAGTGGCAGCGATAATAGTCAACATCTGGGGCACCCTAACTTACACAAGTTTAGTGGATTAGTAAATGAGTGTATTCCACATAATATTGGTTCTGGTTCTTTTCTGCTTCCATCTGGAAATAATGACTTGTTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTACGAACACTCAACGCGTGTCTTGTAAAAGGAAGGCTGTTGAGGGAAATACTGGACAATCTTCAGATGGAGGCAGTTCTAGCTACAGTCAGCGTACAGATGGTAGCGCTTGGCACAACATTCCTACTCAGGATCATGCTGGGAACAATTTAAGCAGATCTATTTCCTCAGAACAGTTAAACGCAAGACTTGGCCTGGGTATGGGGGATGGAGCCTCTGAAAGTCTTCCTGATTCAGACGTTGCAGGAAGCTCAGAAAGCTTCCACAGGAATTCCCGTTTGAGGACAAATCCTGCAAACCAACTAAATTCCATTCCTCCCACTGCATTCTCAACTGGGAACATGATTAGGCATTCTGGTGTTTCTTTATCTTCTCAAGTGTCACAAAGGTTTCATCCTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACTAATAGATAACATAATTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCAAGGAATAGGCAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACATCCATTCATCAAACTCAATTACAAGTGTGAACAGGGATAATCTACCACAGGAGGATGCAAGCTCCAGAAGTATGTCGAGAAATATTTTGGAACACCCAGTGTTTGTACCTGCTACTGATTTAAGAAATTTGGTTCAAAATCCAACAATTAGAGGTTCAAGTTCAAGCAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGAACTGGATCAAATTCAGCTACCAATCCTCCATCTGCCTCAACCTGGGTTTCTCATCCTAATCCTCCACAGCATCCCCGGAGGTTATCTGAATATGTTCGTCGGTCCTTGTCTTCTCTCGGTTCTGATGCTACAGGAGGTCCAGGCAATAACCATCCTTCCTTGCGCCCTGGTCCTTCTACATCTGTATCGAGGGCATTATCATCTGGGGCACACTTGAGATCTTCTTCATGGTTGGAGAGGCAAGGAGATAGTGACTTCAGAATTCCCTATTCGTTACGTACTTTAGCTGTTGCGAATGAAGGAAGTAGCAGTAGACTTGTATCTGAGATCCGCAATGTTTTGGGCCTTATGCGAAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATACTTGATCAATCAATATTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTCGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAATACTGGATTGAGTGAGGAAACCGTATTGAAACTTTTGAAACAGAAAAAGTATTCAATTGAAACAGGATCTCAGCTTGATGCAGAACCATGTTGTGTTTGTCAGGAGGATTATGTTAATGGAGATGATATTGGAACCCTTGATTGTGGCCATGATTACCATAGCAACTGTATCAAAAAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2118 0.4221 MQGQRGTIGSMSETLEFDCGSTSSNATVDQQICWNNVRNPAENQIPDYILSPGDINQSYMNSVNHEWQNLSGWSLGEPSSSNTPNEVNTNEQKRELEWASSISAGPRLEDRGREPTNALSLDSVNTGPMYVHNSNSHLISQNLNLNAGLADSGSDNSQHLGHPNLHKFSGLVNECIPHNIGSGSFLLPSGNNDLLVEDTDGRPGCSTNTQRVSCKRKAVEGNTGQSSDGGSSSYSQRTDGSAWHNIPTQDHAGNNLSRSISSEQLNARLGLGMGDGASESLPDSDVAGSSESFHRNSRLRTNPANQLNSIPPTAFSTGNMIRHSGVSLSSQVSQRFHPVDNSLNLRSAPLIDNIIPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSITSVNRDNLPQEDASSRSMSRNILEHPVFVPATDLRNLVQNPTIRGSSSSSANLSIPGNVASSSRTGSNSATNPPSASTWVSHPNPPQHPRRLSEYVRRSLSSLGSDATGGPGNNHPSLRPGPSTSVSRALSSGAHLRSSSWLERQGDSDFRIPYSLRTLAVANEGSSSRLVSEIRNVLGLMRRGGNLRFEDVMILDQSIFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETVLKLLKQKKYSIETGSQLDAEPCCVCQEDYVNGDDIGTLDCGHDYHSNCIKKWLMHKNLCPICKTTGLAT* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01099 705 MobiDBLite consensus disorder prediction 270 318 - -
Rops10g01099 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Rops10g01099 705 FunFam E3 ubiquitin-protein ligase MBR2 626 703 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 433 522 - -
Rops10g01099 705 Pfam Ring finger domain 658 699 IPR001841 -
Rops10g01099 705 MobiDBLite consensus disorder prediction 198 256 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 490 522 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 202 256 - -
Rops10g01099 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Rops10g01099 705 MobiDBLite consensus disorder prediction 374 411 - -
Rops10g01099 705 SUPERFAMILY RING/U-box 648 701 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 283 318 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 74 119 - -
Rops10g01099 705 MobiDBLite consensus disorder prediction 74 97 - -
Rops10g01099 705 SMART ring_2 658 698 IPR001841 -
Rops10g01099 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 156 703 IPR045191 GO:0061630
Rops10g01099 705 MobiDBLite consensus disorder prediction 433 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01099 Rops-Chr10 22797760 22807223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01099 1 705 C3H Transcription Factor Family AT2G15530 33.333 2.81e-82 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01099 10 22797760 22807223 Rops10g01099 10 22797760 22807223 ECH
Rops9g02206 9 40444335 40451258 Rops10g01099 10 22797760 22807223 PCT