LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01096	ATGGCTCTTCTGCTAGACAACTGTGAAGGCATTTTACTCTCTTTAGATTCTCACAAATCAGTGCCTGCTCCCTTCCTCACCAAAACATACCAGCTGGTGGATGATCCCGCCACAGATCACATAGTTTCTTGGGGCGAAGATGACACCACCTTCGTTGTTTGGCGTCCTCCTGAGTTTGCTAGGGATCTTCTCCCTAACTACTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTTCCAGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAAGGAGAGAAACATTTGCTGTGTGAGATCCATAGAAGAAAAACGGCTCAGCCTCAGCAACAAGGAAACATGAACCATCATCATCATCACCATTCTTCACTTCCCACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATTTCTCCCCCTAATGACTCAGATGAACAACCCAATTGGTGTGACTCTCCTCCACTCACTTCTCCAAGAACAGCCACTTCTGTCACCAACTACAACACTTCCGTTACTGCGCTTTCTGAGGACAATGAAAGACTCAGGCGAAGCAACAACATGCTCATGTCTGAACTCGCACACATGAAGAAGCTCTATAACGATATAATCTACTTTGTTCAGAACCATGTTAAGCCAGTGGCTCCAAGCAACTCTTATTCTTCTTTCCTACTTTGCAACAACACACCACAAGCATCTGCTCCTACTCCAATAACTACGAGTAATGTTTCCATGGTGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTACTAACCCTAAGCAAGCAACTCACCCTCAACATCAACCTCAAACCCATGTTGTGAACTCTCCCACCAACACTTCAAGGAGTTCTATAACCATTGTTGAAGCCCCCAACAGTAACAGCTGCAAGACCAAGCTTTTTGGGGTCTCGTTACAGTCCAAGAAAAGAGTGCACCCTGAATACGGATCTAATAATCCTAGTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTAGAAAATGATGACTTGGGTTTGAATCTCATGCCTCCATCCACTTGTTAG	1077	0.4475	MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQQGNMNHHHHHHSSLPTFFPFSSRVSISPPNDSDEQPNWCDSPPLTSPRTATSVTNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSFLLCNNTPQASAPTPITTSNVSMVQRPMNQLLGYYSTNPKQATHPQHQPQTHVVNSPTNTSRSSITIVEAPNSNSCKTKLFGVSLQSKKRVHPEYGSNNPSNSETNKARLVLENDDLGLNLMPPSTC*	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01096	358	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Rops10g01096	358	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Rops10g01096	358	MobiDBLite	consensus disorder prediction	146	172	-	-
	Rops10g01096	358	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	Coils	Coil	181	201	-	-
	Rops10g01096	358	Gene3D	-	17	116	IPR036388	-
	Rops10g01096	358	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Rops10g01096	358	MobiDBLite	consensus disorder prediction	271	290	-	-
	Rops10g01096	358	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	18	283	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01096	Rops-Chr10	22755917	22757358	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01096	1	357	HSF	AT1G46264	56.658	2.19e-124	360

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Rops10g01096		HSF_DNA-bind	2.8e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g01096	10	22755917	22757358	Rops10g01096	10	22755917	22757358	ECH
	Rops9g02210	9	40491425	40492909	Rops10g01096	10	22755917	22757358	PCT