Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00999 ATGAGAAGACCCGGAAGCAACAGTAGCAGCAGCAGTGAGAGTAAAAAAAGTTGCAATAGAGGTCACTGGAGACCTGCTGAAGATGAGAGACTAAAGCAACTTGTGAAGCAATATGGTCCACAGAACTGGAATTTCATTTCAGAACAACTTGAAGGAAGATCAGGGAAAAGTTGTAGATTGAGGTGGTACAATCAACTAGACCCAAATATCATTAAAAAGCCATTCACTGATGAAGAGGAAGAAATGCTGCTAGCACTTCACAAAGTGAAGGGAAACAAATGGGCTGCAATAGCTAGATTCTTCCCTGGAAGAACAGACAATGCTGTGAAGAATCACTTTCATGTACTAACAGCTAGAAGGAAGAGAGAGCGTTTGACACTGTTTGGTGATACAATTGGCCATAATTCAACAAGGATTAACTTCAACTTACAAAACTATAAAAACACAGGAATATTTGGTATGTCCTCAACTCCTTGGACTCTAACTAGTGGTTCTTCAACCATCACATCTAGTTTTGGTGCTCATGGTGTAAATAACAAGGCTCACAAAGACTCAAGGGTTGCTGGAGAAAAATCACATGATTTAAACCATTTTCCTTCTTATAATCCTTCAGCTGTAGGTTCTTCTATTCTTGGCAGTTACCATAGCTTCACTGCACCAGGACTTCCCAGTATTGGCAAGGTTGTTCCCCTTCCAAGTAAGTTCTCAAACTCTAATTATGGCCAAAGAACTGAGGACTCAATCAAAAGTTGCAACACAGCTAAGCATCCACGTGATAATAACTCCATGGCATTGTGTAAGTTGACTATGAATATTCATGAGCAAGAACAACCTGAACCTCTTAATCTCAAGCAAAAGGGTGTTTCATTCATAGACTTTCTTGGAGTGGGAAGTTCTTCTGCTCATGATGACATTATTGGTGAACCATGA 930 0.4 MRRPGSNSSSSSESKKSCNRGHWRPAEDERLKQLVKQYGPQNWNFISEQLEGRSGKSCRLRWYNQLDPNIIKKPFTDEEEEMLLALHKVKGNKWAAIARFFPGRTDNAVKNHFHVLTARRKRERLTLFGDTIGHNSTRINFNLQNYKNTGIFGMSSTPWTLTSGSSTITSSFGAHGVNNKAHKDSRVAGEKSHDLNHFPSYNPSAVGSSILGSYHSFTAPGLPSIGKVVPLPSKFSNSNYGQRTEDSIKSCNTAKHPRDNNSMALCKLTMNIHEQEQPEPLNLKQKGVSFIDFLGVGSSSAHDDIIGEP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00999 309 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Rops10g00999 309 PANTHER MYB PROTEIN-RELATED 20 240 - -
Rops10g00999 309 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Rops10g00999 309 FunFam MYB transcription factor 20 71 - -
Rops10g00999 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 121 IPR017930 -
Rops10g00999 309 CDD SANT 74 116 IPR001005 -
Rops10g00999 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Rops10g00999 309 Gene3D - 73 131 - -
Rops10g00999 309 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g00999 309 Pfam Myb-like DNA-binding domain 23 83 - -
Rops10g00999 309 Gene3D - 12 71 - -
Rops10g00999 309 MobiDBLite consensus disorder prediction 1 16 - -
Rops10g00999 309 CDD SANT 23 64 IPR001005 -
Rops10g00999 309 SMART sant 71 119 IPR001005 -
Rops10g00999 309 SMART sant 19 68 IPR001005 -
Rops10g00999 309 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00999 Rops-Chr10 21460005 21461312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00999 8 183 MYB Transcription Factor Family AT4G33450 52.632 1.35e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00999 Myb_DNA-bind_6 1.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00999 10 21460005 21461312 Rops1g01824 1 37461089 37462581 ECH
Rops10g00999 10 21460005 21461312 Rops2g04486 2 82014954 82016213 ECH
Rops10g00999 10 21460005 21461312 Rops10g00999 10 21460005 21461312 ECH
Rops9g02179 9 39862056 39863217 Rops10g00999 10 21460005 21461312 PCT
Rops10g00999 10 21460005 21461312 Rops9g02451 9 45448628 45458897 PCT