Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00656 ATGGGTTTATCTTCTCTCCACGTCTGCATGGAATCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCACCATCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGTCCAAGGTGTGATTCAACTCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACCAAAGGAGGGACTCTTCGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAACAAGAAAGTTTCTGCCAAGAAATCCAATGACCATTTAGCTAATAATCAAAACCAAGCACAACCTGGATCCTCCTACCATCATCACAACCCCAAGGATCTTCAACTTTCTTTCCCAGATGTGCAATTTTCCCACCTTAGTAACCTACTTGGTACTAATGCTGGAACAATGGGAAACCCTAATATCATGGAGAACAAATATAATATTGGTATGCTTGATAACCCTAGGCCTATTGACTTCATGGAAAGTAAGTTGGAAGGCATAATTGGGAGTAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGATATGGGTATGGCTGTTGGGCTTGGAGATATGAATGGGCAAAATGGGTTGCCACCAAATTTTCATGGTCTTTGCTCTCCTGCATTTGGTGGTGGCATGTCCTTTGATGGTAACAACACTAATGGGGCTTACTTAATGGACTCATGCCAGAGACTCATGCTGCCATATGATGCCAATGAGGACCATAATGCCTCCATTGATGTGAAGCCAAACCCTAAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAGTCATTTGGGTATCTTAATGGTCCAGGATCATGGAGTGGCATGATGAACGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAA 984 0.4411 MGLSSLHVCMESSDHWLQGTIHEESGMDSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHLANNQNQAQPGSSYHHHNPKDLQLSFPDVQFSHLSNLLGTNAGTMGNPNIMENKYNIGMLDNPRPIDFMESKLEGIIGSSSSRNFDFFGNSDMGMAVGLGDMNGQNGLPPNFHGLCSPAFGGGMSFDGNNTNGAYLMDSCQRLMLPYDANEDHNASIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGPGSWSGMMNGYGSSTTNPLV* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00656 327 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Rops10g00656 327 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Rops10g00656 327 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
Rops10g00656 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 183 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00656 Rops-Chr10 16189482 16191573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00656 1 327 C2C2-Dof Transcription Factor Family AT5G62940 40.310 1.18e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops10g00656 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00656 - - gmx:778107 538.495