Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00521 ATGCAGGAAACTAAAGACCCTGCAATTAAACTCTTCGGCCAGAAGATTCCCTTTCCCTGGGAAACTGAGGCTTCTGCCATTGCCGGCGATGAAACTGCCTCGCCGGTGGTTATGGAGGAAGATGAAGAAGAAACATACGTTGGTGAGTCAGAGACTGAAGAGGAGAAAGAACTAAGAAACAAGGATCCTCGAGCTGAAAAAGTTACTGAGAAAAAGAAAGAAGCTGATCCTCCTCCAAATGCTGCAGAGACTAACAAAAATTCAGGCACAGAAGGTATTCAGAACCCAAAGACACCTTCCATAAATGAAGAAACTGCAAAATCAGAAAAGGGAAAGTTAGAGAATGAGCAAAGTGATGCAACAAACAACAACTCTCAAGAGAAAACACTGAAGAAGCCAGATAAAATAATACCATGTCCACGTTGTAACAGCATGGACACAAAGTTCTGTTACTACAACAATTACAATATTAACCAGCCACGGTATTTCTGCAAAGCATGTCAAAGATATTGGACTGCTGGTGGCACCATGAGGAATGTGCCAGTAGGGGCAGGGAGAAGAAAGAACAAGAACTCTTCCTCACATTATCGCCATATAACCATCTCTGAGGCACTTCAAGCTGCTGGAATTGGTGCTCCTAATGGAACTCATCTTCCAACTTTGAAAACAAATGGTAGAGTCCTTAGCTTTGGATTGGATCCACCAATTTGTGATTCCATGGCATCTGCCTTGAACCTTGCAGAGAAAAAGGCTCTTAATGGCACCACAAGAAATGGGTTTCATACCATGGAGGAAAAGAGAATTTCTGTTCCATGTAAAAGTGGAGAAAATAATGGTGATGATTGTTCAAGTGCATCTTCCATTACAGTTTCAAATTCCATGGAGGAAAATGGCAAAAGCACTTCCCAGGAATCATTACTACCAAGAAATAATGGTTTCATTCCTCAAGTTCCATGCATTACTAGTGTTCCTTGGCCTTATCCTTGGGGTTCTGGAGTTCCCTCACCACCTGCTATGTGTCCTCCAGGATTTCCCATGTCATTCTACCCTGCTGCTTTTTGGAATTGGAATGTTCCATGGTTCTCCTCTCATCCTTCTGCTGCTCCAAACCCAAGGTCTCCGAGTTCGGGTCCAAATTCTCCAACTCTTGGGAAACACTCTAGGGATGATGATGACATGGTTAACCAAGACCAATTGAAGAAAGAAGAATCACCAAGACAAAGAAACGGGTGTGTTTTGGTTCCAAAAACTTTAAGAATTGATGACCCAAGTGAAGCTGCTAAGAGTTCTATATGGGCAACTCTTGGAATCAAGAATGAATGTGTGAGTAAGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGATGAGAAAAACCATGTTGTTGAAACCTCTCCAGTGTTGTGGGCTAATCCTGCAGCTTTATCTAGATCCCTTAATTTTCATGAGAACTCCTGA 1458 0.4239 MQETKDPAIKLFGQKIPFPWETEASAIAGDETASPVVMEEDEEETYVGESETEEEKELRNKDPRAEKVTEKKKEADPPPNAAETNKNSGTEGIQNPKTPSINEETAKSEKGKLENEQSDATNNNSQEKTLKKPDKIIPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHITISEALQAAGIGAPNGTHLPTLKTNGRVLSFGLDPPICDSMASALNLAEKKALNGTTRNGFHTMEEKRISVPCKSGENNGDDCSSASSITVSNSMEENGKSTSQESLLPRNNGFIPQVPCITSVPWPYPWGSGVPSPPAMCPPGFPMSFYPAAFWNWNVPWFSSHPSAAPNPRSPSSGPNSPTLGKHSRDDDDMVNQDQLKKEESPRQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSKGGMFKAFQSKKDEKNHVVETSPVLWANPAALSRSLNFHENS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00521 485 MobiDBLite consensus disorder prediction 81 102 - -
Rops10g00521 485 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Rops10g00521 485 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Rops10g00521 485 PANTHER CYCLIC DOF FACTOR 2 1 485 IPR045174 GO:0003700|GO:0006355
Rops10g00521 485 MobiDBLite consensus disorder prediction 292 310 - -
Rops10g00521 485 Coils Coil 103 123 - -
Rops10g00521 485 MobiDBLite consensus disorder prediction 365 411 - -
Rops10g00521 485 MobiDBLite consensus disorder prediction 35 51 - -
Rops10g00521 485 MobiDBLite consensus disorder prediction 52 79 - -
Rops10g00521 485 MobiDBLite consensus disorder prediction 292 311 - -
Rops10g00521 485 MobiDBLite consensus disorder prediction 384 407 - -
Rops10g00521 485 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Rops10g00521 485 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00521 Rops-Chr10 13607217 13610215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00521 1 483 C2C2-Dof Transcription Factor Family AT3G47500 47.465 1.21e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops10g00521 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00521 - - gsj:114409713 670.233