Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00501 ATGATGAAGCTTCATTTCAGCAAGATCTACTCATTTGCATGTGGTAAAACAACATTTAGGGGAGATCATTCACATATTGGGGGATATGGTTATTCCAGGGTGGTCTTATGCAATGAACCACATTATGGATTTGAGGAAGGGTTTAGGTATTATACAGATAATTCTGTCAGGTCCACAAAATATACTGTTGCCACTTTCCTGCCCAAGTCACTGTTTGAGCAGTTTAGGAGGGTAGCTAATTTCTTTTTCTTGGTAGCTGGTATCTTAGCCTTCACAAAGCTTGCTCCTTATACAGCTGTTAGTGCTATTGTTCCTCTGTGTATCATCGTTGGGGGAACTATGGTGAAAGAGGGTATTGAAGATTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATGTTTCATAAAGGTGATGGCATTTTTGAATATACAGAGTGGAAGAATCTCAGGGTGGGGAATATAGTGAAGATAAACAAGGATGAATTCTTTCCTGCTGACCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGACATAACTTCTTCCTTAAATGATGACTTCAAATTCCGTGATTTTAAAGCTGTTGTCAAATGTGAAGACCCAAATGCAAATTTGTACTCATTTGTTGGGAGCATAGAGTTTGGAGAGCAAAAATATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGATTCTAAACTTCGTAATACAGACTACATATATGGAGCAGTCATCTTTACTGGTCACGATACAAAGGTTGTTCAAAATGCCACTGATCCCCCTTCAAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATCTACTTCTTGTTTTGTGTTTTATGTTTAATTGCATTTGTTGGATCTATTCTCTTTGGTATTGCAACTAAAGGTGACCTGGACAATGGCTTGATGAAAAGATGGTATCTAAAACCAGATGATTCCTCCATTTTCTTTGATCCAAAAAGAGCATCTGCAGCTGCTATATTTCATTTTTTGACAGCCTTAATGTTGTATAACTTCTTTATTCCCATCTCCTTGTATTTCTCAATAGAAATTGTCAAAGTGCTTCAGAGCATCTTCATCAATCAAGATGTCCATATGTACTATGAAGAAGCAGACAAACCAGCTCATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACCATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCGTCAAATGTTCTGTTGCTGGGGTAGCTTATGGCTGTGCTGTTACAGAGGTTGAGCGAGCCATCGGTAGAAGTAATGGTTTACCTATGATTCATGAGCACGTCAATGGGTTAGAATCAGAATCAGATGAAATCAGGGAAGCTCCTGATAGAAAAGAACCCATCAAAGGTTTTAACTTCATAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTCATGCAGATGTTATACAGAAGTTTTTCCGCTTATTGGCAGTCTGTCATACTGCTGTACCTGAAGTGGATGAAGATACAGGAAATGTCTCGTATGAAGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTGCAAGAGAAGTTGGTTTTAAATTCTACAAAAGGACTCAGACTAGTTTATCAATGTATGAGTTGGATCCAGTTTCTGGTGATGAAGTTGAAAGGATTTACAGGCTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAACGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACTTTGGAACATGTGTGTGAATATGCCGATGCAGGTCTAAGGACCCTGATACTGGCCTATCGTGAACTTGATGAAGAAGAGTACAATGAATTTGATAAGAGATTTTCTGAAGTAAAAAATTCAGTTACTATAGATCGGGACGCACTGATTGAGGAAGTATCAGATAAGATTGAGAGGAAACTAATCCTTCTGGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATTGACAAGCTTGCCCAAGCTAGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTTTCTTGTAGCTTGCTTAGACAAGGAATGAAACAGATTATAATTCATTTGGAGATTCCAGAAATTCAAGCATTGGAGAAGGTTGGAGACAAGATGGCTATTGGCAAGGCATCAAGGGAAAGTGTGCACCGTCAGATATCTGAAGGTGCTAAACTACTTTCTACATCCAGAGGGACTTCTCAGCAGGCATTTGCTCTGATAATTGATGGAAAATCACTTGTTTATGCTCTAGAGGATAATACGAAGAACATGTTTCTAGACCTTGCAACTCGCTGTGCATCTGTTATCTGCTGCCGCTCATCACCAAAGCAGAAGGCACTGGTTACTAGGCTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGCGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATGTAGGGGTCGGAATCAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGTGACATTGCAATTGCACAGTTCCGGTATTTGGAGAGATTACTTCTTGTACATGGGCACTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTTTTATATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTATCGCTCTATAGTGTCTTCTTTTCATCACTTCCTGTTATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCATCAAGTTTCCTATCTTATACCAAGAAGGTGTGCAAAATATGCTCTTTAGCTGGCGTCGAATACTCAGCTGGATGCTTAATGGATTTATTAGTGCCATAATGATATTCTTCTTCTGCACAAAAGCAATAGGGGTTCAGGCCTTTGATGAAGAGGGAAGAACTGCTGGAAAGGATATGCTAGGAGCAACCATGTATACTTGTGTGGTTTGGGTTGTGAACTTGCAAATGGCACTTTCTCTGCGCTACTTCACCTTGGTACAACATATTTTAATCTGGGGTTCCATTGCTTTTTGGTATCTCTTCCTAATGGTATATGGAGCAATGCCTCCAAGCTTTTCTACAAATGCTTACAAAGTCTTCATTGAAACTCTTGCTGCATCTCCATCCTTTTGGATTGTCACATTCTTTGTGGCGATCTCAACACTTATACCATACTTCTCATGCTCAGCAATTCAAATGTGGTTCTTTCCCATATATCATGAAACAGTACAATGGATGAGGTATGAGGGGAAGGCAAATGATCCTGAATAG 3486 0.3999 MMKLHFSKIYSFACGKTTFRGDHSHIGGYGYSRVVLCNEPHYGFEEGFRYYTDNSVRSTKYTVATFLPKSLFEQFRRVANFFFLVAGILAFTKLAPYTAVSAIVPLCIIVGGTMVKEGIEDWRRKKQDIEVNNRRVMFHKGDGIFEYTEWKNLRVGNIVKINKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDITSSLNDDFKFRDFKAVVKCEDPNANLYSFVGSIEFGEQKYPLSPQQLLLRDSKLRNTDYIYGAVIFTGHDTKVVQNATDPPSKRSKIEKKMDKIIYFLFCVLCLIAFVGSILFGIATKGDLDNGLMKRWYLKPDDSSIFFDPKRASAAAIFHFLTALMLYNFFIPISLYFSIEIVKVLQSIFINQDVHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGCAVTEVERAIGRSNGLPMIHEHVNGLESESDEIREAPDRKEPIKGFNFIDERIMNGNWVNEPHADVIQKFFRLLAVCHTAVPEVDEDTGNVSYEAESPDEAAFVIAAREVGFKFYKRTQTSLSMYELDPVSGDEVERIYRLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKNGREFEEKTLEHVCEYADAGLRTLILAYRELDEEEYNEFDKRFSEVKNSVTIDRDALIEEVSDKIERKLILLGATAVEDKLQNGVPDCIDKLAQARIKIWVLTGDKMETAINIGFSCSLLRQGMKQIIIHLEIPEIQALEKVGDKMAIGKASRESVHRQISEGAKLLSTSRGTSQQAFALIIDGKSLVYALEDNTKNMFLDLATRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADVGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCIKFPILYQEGVQNMLFSWRRILSWMLNGFISAIMIFFFCTKAIGVQAFDEEGRTAGKDMLGATMYTCVVWVVNLQMALSLRYFTLVQHILIWGSIAFWYLFLMVYGAMPPSFSTNAYKVFIETLAASPSFWIVTFFVAISTLIPYFSCSAIQMWFFPIYHETVQWMRYEGKANDPE* 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00501 1161 SUPERFAMILY HAD-like 415 919 IPR036412 -
Rops10g00501 1161 CDD P-type_ATPase_APLT_Dnf-like 53 1024 - -
Rops10g00501 1161 FunFam Phospholipid-transporting ATPase 541 699 - -
Rops10g00501 1161 Gene3D - 112 282 - -
Rops10g00501 1161 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Rops10g00501 1161 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Rops10g00501 1161 Pfam Cation transport ATPase (P-type) 521 625 - -
Rops10g00501 1161 FunFam Phospholipid-transporting ATPase 112 282 - -
Rops10g00501 1161 NCBIfam phospholipid-translocating P-type ATPase 51 1149 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops10g00501 1161 SFLD C1.7: P-type atpase like 402 915 - -
Rops10g00501 1161 FunFam Phospholipid-transporting ATPase 699 904 - -
Rops10g00501 1161 Pfam Phospholipid-translocating ATPase N-terminal 45 102 IPR032631 -
Rops10g00501 1161 SUPERFAMILY Calcium ATPase, transmembrane domain M 48 1141 IPR023298 -
Rops10g00501 1161 NCBIfam HAD-IC family P-type ATPase 836 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00501 1161 ProSitePatterns E1-E2 ATPases phosphorylation site. 422 428 IPR018303 -
Rops10g00501 1161 Gene3D - 695 904 IPR023214 -
Rops10g00501 1161 SUPERFAMILY Calcium ATPase, transduction domain A 139 280 IPR008250 -
Rops10g00501 1161 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 498 666 IPR023299 GO:0000166
Rops10g00501 1161 Gene3D - 564 673 IPR023299 GO:0000166
Rops10g00501 1161 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Rops10g00501 1161 SFLD p-type atpase 402 915 IPR044492 -
Rops10g00501 1161 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00501 Rops-Chr10 13313199 13323735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00501 4 1161 Primary Pumps ATPases AT1G68710 72.321 0.0 1808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00501 10 13313199 13323735 Rops10g00501 10 13313199 13323735 ECH