Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00410 ATGCAGGAAATACATTCCTTAGGCGGCGACGGAAACAGAAGACCGAGGCTTCACCACCACCACCACCATCAACATCATCATCAAACGTTGAAGTGCCCTCGCTGTGACTCTCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGAACTGCCGCAGATACTGGACCAAAGGCGGCGTCCTCCGTAACATCCCTGTCGGCGGTGGTTGCCGGAAATCAAAACGCTCCAACAACAACAACGACAAATCATCCTCTTCCGCTCCGGCAACCACACCAACACCGCAACAACCACCGGAACACAAGTCCAACTCTCACTCCAGCAGCGAAAGCTCCACCGTTACCGTTACGGCGGCGAAATCAAACGCTGCGTTTAACAGTAAGTTGTTGATGGAGGATAGGACCAAGGTGGTTACAAACCCTGTTTTGGAGTTGGAACAGGGAAGTGGAGTTTTTAACACTAGCTTAATAACTTCAACGAACGAGGCATTGGTGTTTGGTTTTGGGGATAATATACTTGATACGACGTCGTTTGTGTATGAAACTACTCAAGGGAATGATCAGGTACAGTTGGGAACAGGTGGTGGTGACCTGCAACAGCAGTTCACGGTTCCTCTTGAGTTTTCTTCGCTGCAAAATAAGACTGGGAATGGAGGATTTGGATCGTTGGATTGGCATGCTGATGTTGATCCAGGTTTGTTTGATCTTTCTAACACCGTTGATCAGACTTATTGGACCCACAATCACTGGTCTGATCAAGATAATCCTACTCTCTTTCATCTTCCATGA 813 0.4785 MQEIHSLGGDGNRRPRLHHHHHHQHHHQTLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNIPVGGGCRKSKRSNNNNDKSSSSAPATTPTPQQPPEHKSNSHSSSESSTVTVTAAKSNAAFNSKLLMEDRTKVVTNPVLELEQGSGVFNTSLITSTNEALVFGFGDNILDTTSFVYETTQGNDQVQLGTGGGDLQQQFTVPLEFSSLQNKTGNGGFGSLDWHADVDPGLFDLSNTVDQTYWTHNHWSDQDNPTLFHLP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00410 270 MobiDBLite consensus disorder prediction 75 123 - -
Rops10g00410 270 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g00410 270 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Rops10g00410 270 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Rops10g00410 270 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Rops10g00410 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 191 IPR045174 GO:0003700|GO:0006355
Rops10g00410 270 MobiDBLite consensus disorder prediction 88 123 - -
Rops10g00410 270 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00410 Rops-Chr10 11380673 11381907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00410 12 270 C2C2-Dof Transcription Factor Family AT5G60850 43.682 4.69e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops10g00410 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00410 - - vun:114196340 266.544