Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00392 ATGCCTGAAATGAATAGAGAGACATTTCTGAATCAAGAGCTTCTCCTTGGAGTGTTTAAGTGCTTTGATCGTGATGGGAATGGTTATATATCAGCAGCAGAGTTAGCTGGGGCAATGGCCAAAATGGGTCAGCCCCTTACATATAGAGAGCTCACAGAGATGATCAGAGAGGCTGATACAGATGGTGATGGTGTAATTAGCTTCAATGAGTTTGCCAATGTAATGGGTAGGTCAGCATCTGATTTCTTAGGCCTTGGATTGTGGTAA 267 0.4307 MPEMNRETFLNQELLLGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIREADTDGDGVISFNEFANVMGRSASDFLGLGLW* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00392 88 Gene3D - 2 84 - -
Rops10g00392 88 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Rops10g00392 88 CDD EFh 18 75 IPR002048 GO:0005509
Rops10g00392 88 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Rops10g00392 88 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Rops10g00392 88 Pfam EF-hand domain pair 16 75 IPR002048 GO:0005509
Rops10g00392 88 SMART efh_1 14 42 IPR002048 GO:0005509
Rops10g00392 88 SMART efh_1 50 78 IPR002048 GO:0005509
Rops10g00392 88 PANTHER CALCIUM BINDING PROTEIN 6 75 - -
Rops10g00392 88 FunFam probable calcium-binding protein CML18 6 82 - -
Rops10g00392 88 SUPERFAMILY EF-hand 11 77 IPR011992 -
Rops10g00392 88 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00392 Rops-Chr10 10774301 10774567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00392 1 87 EF-hand Containing Proteins AT1G18530 70.115 7.08e-43 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00392 10 10774301 10774567 Rops10g00392 10 10774301 10774567 ECH