Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00376 ATGTTTCACTCTCACAATGGCAATGAACCAATCTCCAATTTTGACCAAGCATTTCACTGCAGGCCTTTTCCCATTGACTTTGAAAGCAACAACCCAACATCAAAACAAGAAAGCAATTGTGACCTTCCTCCTCCTTTGTCCTTTTTTCACTTCCCTTCTCCCTTTGAATACAATGAAATTTTCCTTGACCAACCCCATGATTTCCCACTTCAGTTTCAACATCAACAACCTCTCGCTGAGCCTGAGCCTGAGCCTGAGGTTGAAACCCAACCCATTGTTAACAAGGAGGTTTCAATTAAAAAGAAGTTCCCTGGAAAAGGAGGAAAACACATGACAAAGGAACAGATCCCTGGAAAAGGTAGAGATAGGCACAGCAAGATTAACACAGCTAAAGGACTGAGAGATCGGAGAATGAGACTTTCCCTTGAAGTTGCTAAGAGGTTTTTCGGTCTACAAGACATGTTGGGCTTTGAGAAAGCTAGCAAAACCGTGGAGTGGTTACTAAATCAAGCAAAAGTTGAAATCAATCAACTAGCTGCAAAGGGTGCTTCTTCAACTTCAGAATGTGAAGGTGTATCTAGCCTTGAAGAGGTTGTAGTTAATACAATCCAAGAACCTGTGAAGAGAAGGGTCAAGCGTTCAAGAAAGAGTGCATTCCATCCTCTTGCAAAGGAGTGTAGGGAAAAAGCAAGGGAAAGGGCAAGAGAGAGGACAAAAGAAAAGATGAGATCAAAGCAAGGTAGAGAGGAAACAAATCATAAACTGAGCCAATTGGGTTCCTGGAATCCCTTTGAAACTGGAGAAGAATCTGGTACCCAGAGCCAAAGCATGAATCCCTCCTTGGATTTTGAAGCTAAAGAACAAAATTCTCTCTCAAAGGAGCATTTGGGGACTGTAGAGACCGTGGCTCATGATGATTCTTTGCCTATTATGAACAAAAGGAACCCATCTATGATTTTCAATTCTCTGATAAACTCTGGATTCTTTCAAGAAGTACTTCTCAACTAG 1008 0.4167 MFHSHNGNEPISNFDQAFHCRPFPIDFESNNPTSKQESNCDLPPPLSFFHFPSPFEYNEIFLDQPHDFPLQFQHQQPLAEPEPEPEVETQPIVNKEVSIKKKFPGKGGKHMTKEQIPGKGRDRHSKINTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVEWLLNQAKVEINQLAAKGASSTSECEGVSSLEEVVVNTIQEPVKRRVKRSRKSAFHPLAKECREKARERARERTKEKMRSKQGREETNHKLSQLGSWNPFETGEESGTQSQSMNPSLDFEAKEQNSLSKEHLGTVETVAHDDSLPIMNKRNPSMIFNSLINSGFFQEVLLN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00376 335 MobiDBLite consensus disorder prediction 209 291 - -
Rops10g00376 335 MobiDBLite consensus disorder prediction 253 286 - -
Rops10g00376 335 MobiDBLite consensus disorder prediction 102 124 - -
Rops10g00376 335 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Rops10g00376 335 MobiDBLite consensus disorder prediction 218 252 - -
Rops10g00376 335 Pfam TCP family transcription factor 120 244 IPR017887 -
Rops10g00376 335 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 88 286 IPR005333 GO:0003700
Rops10g00376 335 ProSiteProfiles R domain profile. 224 241 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00376 Rops-Chr10 10516564 10518171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00376 111 238 TCP Transcription Factor Family AT3G18550 44.785 5.38e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops10g00376 TCP 3.8e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00376 10 10516564 10518171 Rops10g00376 10 10516564 10518171 ECH
Rops10g00376 10 10516564 10518171 Rops2g03737 2 69139792 69141144 ECH
Rops10g00376 10 10516564 10518171 Rops8g00312 8 6085571 6087312 ECH