Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2104 ATGCAGCATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGGCCGCACCACCACAACCACCACCAGCCGCTAAAGTGCCCTCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGTTGCCGTAAATCGAAACGCTCGAACAAGCCCAAAACTACCGCCACCAACACCAACAGCGATAACAACAACCCTCGCTCTTCCTCGCAGATCGCTCCGGCGACGGCGTCAACGACGCCGTCGGCTGCGGAGGCGGAGCGCAACTCAAACTCCCACTCCAGCAGCGAAAGCTCCACCCTAACGGTCACGGAGGCGATGTCGGCGCCGACATCAAACGCTTTGTCTAAGAACTCTTTGTTTCTCGACAGCGTTCGCGAGTCGAAGCTGTTCGCTAACGCCGATAACCCCTCTTTGGAGGGCGGTGGAATTTTCCCCGAGATAGGGAGCTTCACCAGCCTCATTGCTTCAAACAACGAAGCACTGGGGTTTGGGTTTGGGAATTGCAGTAATAATGACACCAACAGCAACAGCAACAACAACATCCTCGATACGACCCCGTTTCGGTTCGGCGTTGCTCATCCGCAGGGGAATAATCAGGCGCAAGTGGCACCAGGCGGAGAGCAGCAGCAGAATCATGAGGAGTTCGGTACGGCGTCGTTTCTCGATCTGACGGCGCCGCTGGAGTTTTCGTCGTTGGCGCAGAAGAGTGGTGAGCATGGAGGAGGGTTTGGGTCGTTGGATTGGCAACCCAGTGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCAACCGTACTGGAGCAACAGTCATTGGTCTGATCAAGATAATCCTGCTCTCTTTGATCTTCCTTGA 957 0.5569 MQHIHSICGGDRRLRPHHHNHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTATNTNSDNNNPRSSSQIAPATASTTPSAAEAERNSNSHSSSESSTLTVTEAMSAPTSNALSKNSLFLDSVRESKLFANADNPSLEGGGIFPEIGSFTSLIASNNEALGFGFGNCSNNDTNSNSNNNILDTTPFRFGVAHPQGNNQAQVAPGGEQQQNHEEFGTASFLDLTAPLEFSSLAQKSGEHGGGFGSLDWQPSGADQGLFDLPNTVDQPYWSNSHWSDQDNPALFDLP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2104 318 MobiDBLite consensus disorder prediction 69 141 - -
Pvu9g2104 318 MobiDBLite consensus disorder prediction 296 310 - -
Pvu9g2104 318 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Pvu9g2104 318 PANTHER DOF ZINC FINGER PROTEIN 4 11 304 - -
Pvu9g2104 318 MobiDBLite consensus disorder prediction 1 25 - -
Pvu9g2104 318 MobiDBLite consensus disorder prediction 266 318 - -
Pvu9g2104 318 MobiDBLite consensus disorder prediction 83 141 - -
Pvu9g2104 318 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Pvu9g2104 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 304 IPR045174 GO:0003700|GO:0006355
Pvu9g2104 318 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2104 Pvu-Chr9 30151578 30153734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2104 11 318 C2C2-Dof Transcription Factor Family AT5G60850 38.994 4.02e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu9g2104 zf-Dof 4.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2104 - - vun:114196340 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2104 9 30151578 30153734 Pvu9g2104 9 30151578 30153734 ECH
Pvu3g1882 3 39382825 39384177 Pvu9g2104 9 30151578 30153734 PCT