Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2081 ATGTATTGTACATCCCTATTGCATTGTTGTTTCGTTGATTACCTTGAGAACAACATGTCAAAACTTAAAGTTAATCAACTTCGCCAATTAAGGGATATTTTTGAAAAATTCGACACAGATTCAGATGGTAGCCTAACGAATATGGAGCTAGCTGCCCTCCTTGGGTCGTTAGGGTTAAAGCCCTCAAGTGAGCAAATCCATGTGTTATTAACCAACATGGATTCAAATGGAAATGGATTTGTGGAGTTTGATGAGTTGGTGGATGCAATTTTGCATAACATAAGTGCAAAGATATTGTTGAACCGAGAGATGCTTCTTGGAGTATTTAAATATTTTGATCGTGACGGGAATGGTTTTATAACAGCCGCAGAGTTAGCAGGGGCAATGGCCAAAATGGGTCAACCCCTTACGTATAGAGAGCTCAGAGAGATGATCACGGAAGCTGATACAGACGGGGATGGTGTCATTAGCTTCAATGAGTTTGCCACTGTGATGGGTAGATCAGCCTCTGACTTCTTAGACTTTGCATTGTTGTAA 537 0.406 MYCTSLLHCCFVDYLENNMSKLKVNQLRQLRDIFEKFDTDSDGSLTNMELAALLGSLGLKPSSEQIHVLLTNMDSNGNGFVEFDELVDAILHNISAKILLNREMLLGVFKYFDRDGNGFITAAELAGAMAKMGQPLTYRELREMITEADTDGDGVISFNEFATVMGRSASDFLDFALL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2081 178 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Pvu9g2081 178 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Pvu9g2081 178 Gene3D - 9 169 - -
Pvu9g2081 178 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Pvu9g2081 178 Pfam EF-hand domain pair 105 165 IPR002048 GO:0005509
Pvu9g2081 178 Pfam EF-hand domain pair 28 89 IPR002048 GO:0005509
Pvu9g2081 178 SUPERFAMILY EF-hand 19 165 IPR011992 -
Pvu9g2081 178 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Pvu9g2081 178 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 21 176 - -
Pvu9g2081 178 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Pvu9g2081 178 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
Pvu9g2081 178 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Pvu9g2081 178 CDD EFh 104 165 IPR002048 GO:0005509
Pvu9g2081 178 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Pvu9g2081 178 SMART efh_1 104 132 IPR002048 GO:0005509
Pvu9g2081 178 SMART efh_1 65 93 IPR002048 GO:0005509
Pvu9g2081 178 SMART efh_1 29 57 IPR002048 GO:0005509
Pvu9g2081 178 SMART efh_1 140 168 IPR002048 GO:0005509
Pvu9g2081 178 PANTHER CALCIUM BINDING PROTEIN 21 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2081 Pvu-Chr9 29861786 29863978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2081 25 172 EF-hand Containing Proteins AT1G18530 72.297 1.44e-76 224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2081 9 29861786 29863978 Pvu9g2081 9 29861786 29863978 ECH