Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2070 ATGCAATCTCAAACTTCAGATACGTTTCACTCTCACTATGGGAATGAACCAATTTCCTATTATGACCCATCATTTTACTACACCAGGCCCTTTTCCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAAACAACCCTGACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCCTTTGAAGATGCTCAAATTTTCCTCGAACAACACCACGATTTCCTCCTTCATAAACCTCTACCTCAAGACCCCGAGCCTCAACCAGTTAGTATTGCCCTGGAGACTTCTGCTAAAAAGAGTAATCAGATCCCCAGAAAAAGACTCGGCAAGAGAGATAGACACAGCAAGATTAACACCGCAAGAGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAAGAGTTTTTTCGGCTTGCAAGATATGCTAGGCTTTGAGAAAGCTAGCAAGACCGTGGAGTGGCTAATGAACCAAGCAAAAGTTGAAATCAATCGTCTAGCGAAGGAGAAAAGGAAGCAGAAGAAGAATGTTCACCACAGTTGCAGCAGTGCTGGTTCGGAATGTGAAGAAGGGGTGTCTAGTGTTGATGAGGTTGTAGTGAGTAGAGATGAAGAACAAGCAGGAGAAGAGAGAGAGGAGAAAGTGACGAAGAGAAGGGTTAAGCTTTCTAGGAAGATCAGTGCATTCCATCCTCTTGCAAAGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATCAGAAGTCGTGGCCTAGCTCAAGAATCAAAGCCATGTAGAGAAGAAACAGATCAACATCTGATCCAATTGGGTTCCTGGAATCCCTCGGAAACTGGACAAGAATTTGGTACCAAGAGCCATATTGTGCATCCTTCCTTCAACGTGATCACTGAGGGTAAACAACAATCCTACTACCCAAAGGAGCATGACGATGATTCTTTAGTTATTTTGAGCAAATGGAGCCCCTCCTTGATCTTCAATGAACACCAATTTGCAGAGTTTCAGTCCTTGGGAAAACCTTGGGAGGCCTAA 1056 0.4432 MQSQTSDTFHSHYGNEPISYYDPSFYYTRPFSIDSESNPTSKQENNPDLPPLSFFHFPSPPFEDAQIFLEQHHDFLLHKPLPQDPEPQPVSIALETSAKKSNQIPRKRLGKRDRHSKINTARGLRDRRMRLSLDVAKSFFGLQDMLGFEKASKTVEWLMNQAKVEINRLAKEKRKQKKNVHHSCSSAGSECEEGVSSVDEVVVSRDEEQAGEEREEKVTKRRVKLSRKISAFHPLAKECRERARERARERTREKIRSRGLAQESKPCREETDQHLIQLGSWNPSETGQEFGTKSHIVHPSFNVITEGKQQSYYPKEHDDDSLVILSKWSPSLIFNEHQFAEFQSLGKPWEA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2070 351 MobiDBLite consensus disorder prediction 96 123 - -
Pvu9g2070 351 ProSiteProfiles TCP domain profile. 111 169 IPR017887 -
Pvu9g2070 351 ProSiteProfiles R domain profile. 237 254 IPR017888 -
Pvu9g2070 351 MobiDBLite consensus disorder prediction 32 48 - -
Pvu9g2070 351 MobiDBLite consensus disorder prediction 32 53 - -
Pvu9g2070 351 PANTHER TRANSCRIPTION FACTOR TCP18 51 301 - -
Pvu9g2070 351 MobiDBLite consensus disorder prediction 241 269 - -
Pvu9g2070 351 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 51 301 IPR005333 GO:0003700
Pvu9g2070 351 Pfam TCP family transcription factor 110 257 IPR017887 -
Pvu9g2070 351 Coils Coil 159 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2070 Pvu-Chr9 29708357 29710342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2070 9 251 TCP Transcription Factor Family AT3G18550 35.517 1.03e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu9g2070 TCP 8.9e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2070 9 29708357 29710342 Pvu9g2070 9 29708357 29710342 ECH
Pvu9g2070 9 29708357 29710342 Pvu3g1833 3 38915081 38919278 ECH
Pvu9g2070 9 29708357 29710342 Pvu8g0209 8 1767656 1769721 ECH