Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2006 ATGGCTGTGGAAAATCAAAGGGATCATTTGGGGGATGAAGATGGGTGTGTTGACCGTTTTCCTGTGGGTATGCGTGTTCTTGCTGTGGATGACAACCCAACTTGTCTCAAAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGTTGAGGCTCTGAAAATGTTGAGGGAGAACAGACATAAGTTTGACCTTGTTATCAGCGATGTGGATATGCCTGACATGGATGGATTTAAGCTTCTTGAGTTGGTGGGACTTGAAATGGACCTTCCTGTGATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGCAGGGTGTTACACATGGGGCTTGTGACTATTTACTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTAGTCCGAAGAAAGAATTTTGATGGCAGGGATCAGAGCAAGGCATCCAATGACGAAAAGGCTCTGAATATTGCTGGGGAAGGTAGCCCAAGCCTGAGATCAGAAAACAGTGGTGACCAGAATAGAAGGCTTGGTAAAAAAAGAAAGGACCAAAGTGAGGAAGAAGAAGATGATGGGGAAGGGAATGGAGATGATGATGACCCCTCAGCACAGAAGAAACCTCGTGTTGTTTGGTCTGTCGAGCTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTCGGCCTAGAAAAGGCTGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAAACCATCAGGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTACGAATGGGTTCAATAGATGGATTTGGAGATTTTTGCACTGCTTCTGGTTCTGGAAGAATCTCAAACACTACATTACCATCATATGCATCTTCTGGAATTTTCAGTAGGCTGAATTCCCCAGCTGGCTTGAACATGCGAGGAATTAGTTCTTCGGCACTTATCCGTCCTGTTCAGACTCAAAGCATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCCATTTTTTCTGCAAATCAGAACTCAAGTTTGTTGCAGGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAACAACTGTTCAACTGGTTTATCGCAGCGAAGTCAAGTTGATTCAAGTGGATTTGCAGTTGCCTCTGGCTTCCCAGACAGTAGGGCTGCAGTTAATGGTCCAAACAATTCTATATCATGTGGTTCAAATAATCATATAATTTTACAAGGAAATCCACAGCAAACACATAGCCCAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCAGCTTCCTTGAGTGCAGAATCTTTTGGCATATGTGGTTCTTCCAATATGTTGGATTATAATCGGTGTAATGAAGACTGGCAGAATGCAGCACAGTTGTCCAAATTTCCGGCCAATTCCTTGCCATTGTGTGAGGCTTTCAGCAATGACCAACTGCCTCCCCCTGGCATCAATGTTTCCAACTCAGGTACTCATATTGGGAACAGTCCGGTTGGTTTTTCTCCCAGAATGGCAATGACTGTTCCTTTGGAAGATATACAGCCTTTAAGCTATACACCACAACAAAGGTGGGAAGAACATAAATTGGATTATGACCAAAACATGAGTCGTCCCTTCAATCCTGTAAATTCATATGCTTCTTCTAGTGCAGCAACAAGTTCTATGGGGCGTGGCTTAAATCAAAATAATACAATTTGTAGCAATAGAATTGATGCATCTTTGGTTGGCCCATGCACTGAAGTTGATAAATTCTCTTCTGACATTCCACTGAAGTCGAATGAAGCCTACATTTTGGAGCAACTAAAGTCCCAAGAAGGATTTATGCATAATACTTTTGGTACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAACAAAATGAGTTGACATTGTTGGATGGAGAAATTGGATTTGATGCCTCCTACCCTGTTGGATCATGCAACTGA 2031 0.4249 MAVENQRDHLGDEDGCVDRFPVGMRVLAVDDNPTCLKVLENLLRKCQYQVTTTNQAVEALKMLRENRHKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDGRDQSKASNDEKALNIAGEGSPSLRSENSGDQNRRLGKKRKDQSEEEEDDGEGNGDDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKANHQANMVAALGGSDSYLRMGSIDGFGDFCTASGSGRISNTTLPSYASSGIFSRLNSPAGLNMRGISSSALIRPVQTQSINSSLNTLGNIQPSIFSANQNSSLLQGIPTSIELNQSKQNNCSTGLSQRSQVDSSGFAVASGFPDSRAAVNGPNNSISCGSNNHIILQGNPQQTHSPGAFRNQSSVRAASLSAESFGICGSSNMLDYNRCNEDWQNAAQLSKFPANSLPLCEAFSNDQLPPPGINVSNSGTHIGNSPVGFSPRMAMTVPLEDIQPLSYTPQQRWEEHKLDYDQNMSRPFNPVNSYASSSAATSSMGRGLNQNNTICSNRIDASLVGPCTEVDKFSSDIPLKSNEAYILEQLKSQEGFMHNTFGTLDDIMGAMVKREQNELTLLDGEIGFDASYPVGSCN* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2006 676 Gene3D - 207 269 - -
Pvu9g2006 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Pvu9g2006 676 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Pvu9g2006 676 SUPERFAMILY CheY-like 23 145 IPR011006 -
Pvu9g2006 676 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Pvu9g2006 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 656 IPR045279 GO:0009736
Pvu9g2006 676 MobiDBLite consensus disorder prediction 147 210 - -
Pvu9g2006 676 MobiDBLite consensus disorder prediction 177 192 - -
Pvu9g2006 676 SMART REC_2 24 136 IPR001789 GO:0000160
Pvu9g2006 676 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Pvu9g2006 676 CDD REC_typeB_ARR-like 26 140 - -
Pvu9g2006 676 Gene3D - 23 159 - -
Pvu9g2006 676 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Pvu9g2006 676 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pvu9g2006 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 656 - -
Pvu9g2006 676 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2006 Pvu-Chr9 28766162 28771241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2006 16 675 Response Regulator Gene Family AT2G25180 41.916 2.44e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu9g2006 Response_reg 1.7e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2006 K14491 - gmx:100776075 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2006 9 28766162 28771241 Pvu9g2006 9 28766162 28771241 ECH