Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1928 ATGCTCGAAAATAAGGACCCCGCAATTAGGCTCTTTGGCCAGAAGATTGCCTTTTCCGGAGAACCCGACGCTCGGACCATTGCCGCCGTCGAAATCGCCTGGCCTCCGCCGCCGATGGTTGTTGTCAGAGTCGCTGAAGAAGAAGAAGAAGAAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGAGAACAAAGACAAGGATCCTCCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCCAAATGCTGCAGACTGTAAGAAGACCCCAGAGGGTATTCAGAATCCAAACACACCTTCTATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCCACAACAGCTTCTGCCACTACAACCAACTCTCAAGACAACAATAAAGCGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTGAACCAACCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTCCAAGCTGCAAGAATCGATTCCCCAAACGGGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGTTTAGACCCTCCAATTTGTGATTCCATGGCATCGGTCCTCAACCTCGCAGAGAAGAAAACAAGAAACGGGTTTCACTCCAACGAGGATCAAAGAAACAAAGATGACGACTGCTCAAGTGCATCATCCATTACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCACTGATGCCAAACAACAACGGTTTCATACATCATCATCATCACCATGTTCCGTGCATCTCCACCGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCACCACCTGCTTTGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTCATGCATTTTGGAATATTCCATGGTTTCCCACACACTCACAGAACCATGCTGCTCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCTACTCTTGGGAAACACTCGAGGGACGATGATGTGGCGAGGCAAGAGCATCTGCACGAGGAACCTTCGAGGCAGAGAAACGGATCTGTCTTGGTGCCAAAAACTTTGAGAATCGATGACCCCAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGCTGGCATGTTCAAGGGGTTCCAATCAAAGAAAGATGAGAAAGACCGTGTCGTTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCCTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1443 0.4865 MLENKDPAIRLFGQKIAFSGEPDARTIAAVEIAWPPPPMVVVRVAEEEEEEDDDVADSEAEDDENKDKDPPEEVSEKTKEADLPPNAADCKKTPEGIQNPNTPSIDEESAKSKSNKSENDQTDPTTASATTTNSQDNNKALKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHLLKPNGRVLSFGLDPPICDSMASVLNLAEKKTRNGFHSNEDQRNKDDDCSSASSITVSNEESGKSTSQESLMPNNNGFIHHHHHHVPCISTVPWAYPWNSGVPSPPALCPPGFPMSFYPHAFWNIPWFPTHSQNHAAPAPRSPGSGPNSPTLGKHSRDDDVARQEHLHEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGAGMFKGFQSKKDEKDRVVETSPVLRANPAALSRSLNFHENS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1928 480 MobiDBLite consensus disorder prediction 45 69 - -
Pvu9g1928 480 ProSiteProfiles Zinc finger Dof-type profile. 148 202 IPR003851 GO:0003677|GO:0006355
Pvu9g1928 480 MobiDBLite consensus disorder prediction 277 303 - -
Pvu9g1928 480 MobiDBLite consensus disorder prediction 381 401 - -
Pvu9g1928 480 Pfam Dof domain, zinc finger 145 202 IPR003851 GO:0003677|GO:0006355
Pvu9g1928 480 ProSitePatterns Zinc finger Dof-type signature. 150 186 IPR003851 GO:0003677|GO:0006355
Pvu9g1928 480 PANTHER CYCLIC DOF FACTOR 2 1 479 IPR045174 GO:0003700|GO:0006355
Pvu9g1928 480 MobiDBLite consensus disorder prediction 263 304 - -
Pvu9g1928 480 MobiDBLite consensus disorder prediction 70 86 - -
Pvu9g1928 480 MobiDBLite consensus disorder prediction 119 138 - -
Pvu9g1928 480 MobiDBLite consensus disorder prediction 362 412 - -
Pvu9g1928 480 PANTHER CYCLIC DOF FACTOR 1 1 479 - -
Pvu9g1928 480 MobiDBLite consensus disorder prediction 41 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1928 Pvu-Chr9 27607268 27610475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1928 1 478 C2C2-Dof Transcription Factor Family AT3G47500 47.379 1.34e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu9g1928 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1928 - - gsj:114409713 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1956 3 40146058 40147729 Pvu9g1928 9 27607268 27610475 ECH
Pvu2g1755 2 31594717 31597909 Pvu9g1928 9 27607268 27610475 ECH
Pvu9g1928 9 27607268 27610475 Pvu9g1928 9 27607268 27610475 ECH