Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1410 ATGTTCCCGCATACCCTTATTAGTGCTTCTGCCCTTCAACAAATGTTGCATCATCATCACTTTCCAACCCCAATGGAACAACGTTCGAGGTGGAAACCCAACATTGAGGTGGCGCCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCCCGCTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGAGGCTCTCTCCGCAACGTCCCCGTTGGCGGCGGCTGTCGCAAGAACCGCCGCGGAAAGTCCTCCTCGCGCCTCCACCAAACCCAACGCTCTTTCACCTCCGCTTCCGATGACACCGACTCTTCACTTGACGATGCCCATCCAAACAACAACGCCTCTCGTGAAATAGACATGGCCCTTGTGTTCGCCAAATTCTTGAACCCAAAACAAAACGTTGGTGAGGATAACAGCGGCTCCTCTTCTTCCAACAATTACTTAACACCGAGCGCTCAAACCGAGAGTGATACTGCAGTTGCTCACTCGCCGAACAAGGGTTTGCCGGATCCTGTCATTGTAGATTCTGACTCCGATGCAGTGGTGGCAATTGAGAATTTTGGAAGGGAGGAATTGAGTTTGGGTGAGATTGATGATTTGGAGAGGCTTCTGGGTGTGTGTGGGGATGAAGATGGTCTTTGGTGTGATGCTACCCTGTCCTCTTCCGTTTCTTGGGAACCACCCGTGAAGGAAATGCAGTTGCAGGAATTGGAATACTCGATGCCGTTGAATGAAAGCGAGGAGCAATTATTGCCCATCACTTATGCATCTACCGTGAATTCAATGAGTGACACCTGCTGGAGCACTTGGGGTTCCTTTGATCTTTCAACCATGGAAGTGTTCTCATCAAGTCCTTGA 897 0.5039 MFPHTLISASALQQMLHHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRGKSSSRLHQTQRSFTSASDDTDSSLDDAHPNNNASREIDMALVFAKFLNPKQNVGEDNSGSSSSNNYLTPSAQTESDTAVAHSPNKGLPDPVIVDSDSDAVVAIENFGREELSLGEIDDLERLLGVCGDEDGLWCDATLSSSVSWEPPVKEMQLQELEYSMPLNESEEQLLPITYASTVNSMSDTCWSTWGSFDLSTMEVFSSSP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1410 298 MobiDBLite consensus disorder prediction 146 174 - -
Pvu9g1410 298 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pvu9g1410 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 195 IPR045174 GO:0003700|GO:0006355
Pvu9g1410 298 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pvu9g1410 298 Pfam Dof domain, zinc finger 39 93 IPR003851 GO:0003677|GO:0006355
Pvu9g1410 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 23 195 - -
Pvu9g1410 298 MobiDBLite consensus disorder prediction 146 185 - -
Pvu9g1410 298 MobiDBLite consensus disorder prediction 100 124 - -
Pvu9g1410 298 MobiDBLite consensus disorder prediction 83 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1410 Pvu-Chr9 20017224 20018880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1410 31 232 C2C2-Dof Transcription Factor Family AT3G52440 43.750 1.79e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu9g1410 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1410 - - vra:106778892 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1410 9 20017224 20018880 Pvu9g1410 9 20017224 20018880 ECH
Pvu1g0638 1 7655746 7657228 Pvu9g1410 9 20017224 20018880 PCT