Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1282 ATGCCAAGCCCAAAGCAGCTTCTGCAGGCTACAGTTTTCGTCTCGTTACTTGTTCAGGCCCTGTGCAAATCCACCATCGAGCCATGTTCCAACTCCGACTCATGCAACGCGCTTCTGGGATACACCCTTTACACTGACCTCAAAGTCTCCCAAGTGGCGTCGCTCTTCCAAATCGACCCCATCGCGCTTCTCACTGCCAATGCCATCGACATCTCCTACCCCGACGTCGAGCACCATATCCTCCCTTCCAACCTCTTCCTCAAGATCCCCATTTCCTGCTCCTGCGTCGACGGCATTCGCAAGTCCGTCGCCACCAACTACAAGACTCGCCCTTCCGACACCCTCTCCTCTATCGCCGACTCCGTCTACGGCGGCCTCGTCTCCTCCGACCAGCTACGTGAGGCCAATTCCATTCCCGACCCCTCCGTCCTCGATGTGGGTCAGAACCTCGTCGTGCCTCTTCCCTGCACCTGCTTCAACGGCTCCGACAACTCTCTCCCTGCCATTTACCTCTCTTACGTGGTTCGCCCCGTTGATTCCCTCGCTGCCATTGCTGCCAGGTACTTCACCACGCTCACAGATTTGATGAATGTCAATGCCATGGGAAGCATTGCTATTAACGACGGGGATATCCTTGCTGTTCCAATACCCGCCTGTGCTTCGAATTTTCCTAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCCAATGGAAGCTATGCCATTACCGCGGGACACTGTGTCCAGTGTAGCTGTGGTCCGAGAAACCTCAATTTGTACTGTATGCCGGCTTCTCTCGCTGTTTCTTGCTCCAGCATGCAATGCAGAGGCAGCAATCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTTAATGGCACCATAGCAACAACGTTGTCCCCTTCTCTTCAGCCTCGATGTCCAGGTCCACAGGAATTCCCTCCTCTTGTTGCCCCTCCTACCACCGTTGCAAAAGACACAGTGTTTGGACCAGCACCGGCACCACTGTTCGATGGAGCAGGTCCTACATCACCCATACCCTCACTGGTTCCTTCATCGGGGCTTCCAGGATTCTCTCCTGCAAATGGTCCTATTAGTGGCATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCCATTTTGACGCATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA 1248 0.528 MPSPKQLLQATVFVSLLVQALCKSTIEPCSNSDSCNALLGYTLYTDLKVSQVASLFQIDPIALLTANAIDISYPDVEHHILPSNLFLKIPISCSCVDGIRKSVATNYKTRPSDTLSSIADSVYGGLVSSDQLREANSIPDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDSLAAIAARYFTTLTDLMNVNAMGSIAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGTIATTLSPSLQPRCPGPQEFPPLVAPPTTVAKDTVFGPAPAPLFDGAGPTSPIPSLVPSSGLPGFSPANGPISGISSGASAACSLVKPLPILTHALVLLLVKLMIPVAL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1282 415 SUPERFAMILY LysM domain 171 216 IPR036779 -
Pvu9g1282 415 Gene3D LysM domain 160 226 IPR036779 -
Pvu9g1282 415 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Pvu9g1282 415 SMART LysM_2 106 153 IPR018392 -
Pvu9g1282 415 SMART LysM_2 172 215 IPR018392 -
Pvu9g1282 415 CDD LysM 107 152 IPR018392 -
Pvu9g1282 415 Pfam LysM domain 107 153 IPR018392 -
Pvu9g1282 415 Pfam LysM domain 173 214 IPR018392 -
Pvu9g1282 415 Gene3D LysM domain 99 159 IPR036779 -
Pvu9g1282 415 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
Pvu9g1282 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 6 372 - -
Pvu9g1282 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 6 372 - -
Pvu9g1282 415 SUPERFAMILY LysM domain 106 154 IPR036779 -
Pvu9g1282 415 CDD LysM 172 199 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1282 Pvu-Chr9 18487737 18490242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1282 12 390 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.103 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1282 - - gmx:100777292 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1282 9 18487737 18490242 Pvu9g1282 9 18487737 18490242 ECH