Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0728 ATGGCTCTCGAAGCTCTTCAATCACCCACCACCGCCAACCCATCGTTTAGTCCCTTTGAAGAAGCCAATCTCAGTTACTTAGACACACCTTGGGCCAAGCGAAAGCGTTCTAAGCGTGCCCGCATGGACCAACAACTGCAACTGCAACACCCTTCCTGCACCGAGGAGGAGTATCTGGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCACGCTGCCCCCGCCATCCCCACCACCTCCAAGCCTGCTCTCTCAGACAACAACTCGGCGCCGCTCTCCGCCGCGAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGACACAAGGCCAGCCACCGGAAATTAGCTGGCGCCGCCGAAGATCAGCCTGCCTCCTCCAGCGTGACCACCACTTCTGCCTCCAACGGCGGAGGTAGAACCCACGAGTGCTCCATATGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACTGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTTCCAACGAGGTTCTTCGCGGATGAAGAGGTTTCCAGCCCCCATCCTTCCAAGAAGCCGCGTCTCCATCTGACTATACCCAAGATTGAAATCCCTCAGCACTAA 732 0.582 MALEALQSPTTANPSFSPFEEANLSYLDTPWAKRKRSKRARMDQQLQLQHPSCTEEEYLALCLIMLARGGSHAAPAIPTTSKPALSDNNSAPLSAAKLTYKCSVCNKAFSSYQALGGHKASHRKLAGAAEDQPASSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFFADEEVSSPHPSKKPRLHLTIPKIEIPQH* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0728 243 PANTHER ZINC FINGER PROTEIN ZAT10 1 234 - -
Pvu9g0728 243 MobiDBLite consensus disorder prediction 124 150 - -
Pvu9g0728 243 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Pvu9g0728 243 Pfam C2H2-type zinc finger 151 174 - -
Pvu9g0728 243 Pfam C2H2-type zinc finger 100 124 - -
Pvu9g0728 243 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Pvu9g0728 243 SUPERFAMILY beta-beta-alpha zinc fingers 99 173 IPR036236 -
Pvu9g0728 243 MobiDBLite consensus disorder prediction 132 149 - -
Pvu9g0728 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 234 IPR044653 GO:0003700
Pvu9g0728 243 SMART c2h2final6 151 173 IPR013087 -
Pvu9g0728 243 SMART c2h2final6 100 122 IPR013087 -
Pvu9g0728 243 MobiDBLite consensus disorder prediction 218 243 - -
Pvu9g0728 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Pvu9g0728 243 Gene3D Classic Zinc Finger 98 173 - -
Pvu9g0728 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0728 Pvu-Chr9 11852677 11853726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0728 1 235 C2H2 Transcription Factor Family AT1G27730 48.770 2.51e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu9g0728 zf-C2H2_6 2.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0728 9 11852677 11853726 Pvu9g0728 9 11852677 11853726 ECH
Pvu1g0272 1 2449741 2450695 Pvu9g0728 9 11852677 11853726 PCT