Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0680 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCACCTTATGTGAATTCTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGAGCCAAGTTCCAGCAATACCCCAAATGAGATTAACAATAATGAGCAAAAACGAGAACATGGATGGACATCAACCATTACTGGTGGTGCATTGCCTGGTGCAAGGCTAGAAGAAAGGCACCTTGAACCAACCAATACTCTTTCTCTAGACAATGATAATACAGGTCCTATGTACATGCGCAGTCCCGATTCTCGTTTGATGTCCCAGAATCTCAACCTAAATGCAGGTCTAGCAGACAGTGGAAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTACACATGTCTAGTGGGTCAGCAAATGAGTGCTTACCATCTACTGTTGGATCTGGTTCTTTTTTGCTTCCTTCTGCAAATAATGGCTTCCTGGTAGAAGGTTCTGATGGTAGGCCAGGTTCTCGTGATACTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGATGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTGTTTGGCATGCAATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCTCAGAGCAGGTAAATGCAAGACTTGGCCTGGGAATGGGGGATGAAGCATCTGAAAATGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGCGGTTAAATCCTTCAAATCAACAAAATTCTGTTCCTCCCGCTGCATTCTCAACTGGGAGCATGATCAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAATTTGAGATCAGCTCCACCGATAGATAATGTGATTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATTCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAGCTCAAGACGAATGTCTAGAAATATTTTAGAACATCCTGTCTTTGTACCTTCAACTGATTTAAGAAATTTGGTTCAAAATCCAACTGTTAGAGCTTCGAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGGACTGGATCCAATCCAGCTACCAACCCTTCATCTGCCTCAAATTGGGTTTCTCGTCCTAATCCTCCGCAACATCCACGGAGGCTATCTGAATTTGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGTTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGCTCTGGTCTTTCTACCTCTGAACCAAGGCCATTATCATCTGGAACTGGGGCAAATCTGAGATCATCTCCATGGATGGAGAGGCAAGGAGAAAGTGAATTTGGAATTCCTTATTCACTACGTACTCTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTAGTATCTGAGCTCCGCAATGTGTTGGGCCTTATGCGTAGAGGTGGGAATGTGCGTTTTGAGGATGTTGTGATCCTTGATCATCAGTCTTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCGTACGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAATTTTTGAAACAGAAAAAGCACTCGGTTGAAAAAGAAACTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCGATTTGTAAGACAACAGGCTTGGCAACATGA 2118 0.4278 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGDMNSPYVNSINHEWQNLSGWSLGEPSSSNTPNEINNNEQKREHGWTSTITGGALPGARLEERHLEPTNTLSLDNDNTGPMYMRSPDSRLMSQNLNLNAGLADSGSDNSQHLELPNLHMSSGSANECLPSTVGSGSFLLPSANNGFLVEGSDGRPGSRDTRRVSCKRKAVDGNNGQSSDAGSSSYNQHADGVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGDEASENVPDSNIAGSSESFHRNFRLRLNPSNQQNSVPPAAFSTGSMIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVIPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHSSNPVICADRDQEDASSRRMSRNILEHPVFVPSTDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSSASNWVSRPNPPQHPRRLSEFVRRSLFSPGSDVIGNPSNAYSSLRSGLSTSEPRPLSSGTGANLRSSPWMERQGESEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKFLKQKKHSVEKETQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0680 705 MobiDBLite consensus disorder prediction 149 168 - -
Pvu9g0680 705 SUPERFAMILY RING/U-box 644 701 - -
Pvu9g0680 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 121 138 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 377 393 - -
Pvu9g0680 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 704 - -
Pvu9g0680 705 SMART ring_2 658 698 IPR001841 -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 431 480 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 502 531 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 377 406 - -
Pvu9g0680 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 704 IPR045191 GO:0061630
Pvu9g0680 705 MobiDBLite consensus disorder prediction 198 238 - -
Pvu9g0680 705 CDD RING-H2_TTC3 657 699 - -
Pvu9g0680 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 73 98 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 221 238 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 205 219 - -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 73 138 - -
Pvu9g0680 705 Pfam Ring finger domain 658 699 IPR001841 -
Pvu9g0680 705 MobiDBLite consensus disorder prediction 431 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0680 Pvu-Chr9 11275163 11283098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0680 1 705 C3H Transcription Factor Family AT2G15530 32.974 1.86e-73 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0680 9 11275163 11283098 Pvu9g0680 9 11275163 11283098 ECH
Pvu1g0238 1 2045803 2051285 Pvu9g0680 9 11275163 11283098 PCT