Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0678 ATGGCTCTTCTTCTTGACAACTGTGAAGGCATTCTACTCTCTTTGGACTCACACAAATCAGTGCCTGCTCCTTTCCTCACCAAAACATACCAACTTGTGGATGATCCCGCCACAGATCACATAGTTTCCTGGGGTGAAGACGACACCACTTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGGGACCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGTTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTACCGGACCGATGGGAGTTCGCTAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGGAGAAAAACCGCTCAGCCTCAACAAGGAAGCATGAATCACCATCACCACCATTCACATTCTCCACTTGGAGTCAACGTTGGCGTTCCCACTTTCTTTCCCTTTTCCAGCAGAGCCAGCATCTCCCCCTCCAACGACTCCGACGACCAAACCAATTGGTGTGACTCTCCTCCACGTGGAGCCACCTCATTGATGAACGGTGCAGCCAACTACAGCACTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTCAGGCGAAGCAACAACATGCTCATGTCGGAACTTGCGCACATGAAGAAGCTTTATAACGACATTATCTACTTTGTTCAAAACCATGTCAAGCCAGTGGCTCCTAGCAACTCTTACTCTTCTTCTTTGCTGCTATGCAATACACCTGCTGCTACTCCAATAAATGGTGCCAATGTTTCAATGATGCAAAGGCCAATGAACCAGTTTCTGGGGTATTATTCTACTAACCCTAAGCAAGGAACTACTCCATTAACTCAACATCAGCAACATCAACCTCAGACCTACCATGTTAACTCCCCCTCCAACACCTCAAGGAGTTCTATAACGATTGTCGAAGGACCTAGCGGCAACATTAACAGCTGCAAGACAAAACTTTTTGGTGTGTCGCTCCAGTCAAAGAAAAGGGTGCACCCTGATTATGGATCTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGATAAGGATGACTTGGGGTTGAATCTCATGCCTCCATCCACTTGTTAG 1095 0.474 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVGVPTFFPFSSRASISPSNDSDDQTNWCDSPPRGATSLMNGAANYSTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPAATPINGANVSMMQRPMNQFLGYYSTNPKQGTTPLTQHQQHQPQTYHVNSPSNTSRSSITIVEGPSGNINSCKTKLFGVSLQSKKRVHPDYGSNSETNKARLVLDKDDLGLNLMPPSTC* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0678 364 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 PANTHER BNAC06G00310D PROTEIN 293 363 - -
Pvu9g0678 364 PANTHER BNAC06G00310D PROTEIN 12 236 - -
Pvu9g0678 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 293 363 IPR027725 -
Pvu9g0678 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 236 IPR027725 -
Pvu9g0678 364 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pvu9g0678 364 MobiDBLite consensus disorder prediction 274 302 - -
Pvu9g0678 364 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu9g0678 364 Coils Coil 187 207 - -
Pvu9g0678 364 Gene3D - 17 116 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0678 Pvu-Chr9 11250307 11251969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0678 1 363 HSF AT1G46264 55.990 3.01e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu9g0678 HSF_DNA-bind 2.8e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0678 9 11250307 11251969 Pvu9g0678 9 11250307 11251969 ECH
Pvu1g0234 1 1996915 1998671 Pvu9g0678 9 11250307 11251969 PCT