Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0652 ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACCACGCTGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCATCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCACCGCAGCCCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAAACCGTATGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCATCGACCGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCCCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTTCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAACACTGGGCGATCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGATATGAATGGTGTTTACTGCTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACCTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCCGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAATCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAACAAATGGTTCGCCTTTCGTGGGGCCGCAATCCGGCTAATAAGCAGTTTAGAGGAGATTTCGGCAGTCCTTGGAGTGGGGCGTATTACGGGGGACCTGTTTATGATGGTTATGGGTATGCTTTACCACCTCCTCATGACCCCAGTATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA 1263 0.4885 MQPTSNGSDSQATEQNQQTTLPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTDMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0652 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 419 - -
Pvu9g0652 420 CDD RRM3_NGR1_NAM8_like 289 360 - -
Pvu9g0652 420 MobiDBLite consensus disorder prediction 265 293 - -
Pvu9g0652 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 353 IPR000504 GO:0003723
Pvu9g0652 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Pvu9g0652 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Pvu9g0652 420 Gene3D - 172 274 IPR012677 -
Pvu9g0652 420 Gene3D - 275 392 IPR012677 -
Pvu9g0652 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Pvu9g0652 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Pvu9g0652 420 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 27 419 - -
Pvu9g0652 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Pvu9g0652 420 MobiDBLite consensus disorder prediction 20 34 - -
Pvu9g0652 420 CDD RRM2_SECp43_like 184 263 - -
Pvu9g0652 420 CDD RRM1_SECp43_like 93 173 - -
Pvu9g0652 420 MobiDBLite consensus disorder prediction 261 293 - -
Pvu9g0652 420 MobiDBLite consensus disorder prediction 1 19 - -
Pvu9g0652 420 SMART rrm1_1 93 168 IPR000504 GO:0003723
Pvu9g0652 420 SMART rrm1_1 291 358 IPR000504 GO:0003723
Pvu9g0652 420 SMART rrm1_1 186 260 IPR000504 GO:0003723
Pvu9g0652 420 SUPERFAMILY RNA-binding domain, RBD 279 390 IPR035979 GO:0003676
Pvu9g0652 420 SUPERFAMILY RNA-binding domain, RBD 168 279 IPR035979 GO:0003676
Pvu9g0652 420 SUPERFAMILY RNA-binding domain, RBD 60 173 IPR035979 GO:0003676
Pvu9g0652 420 MobiDBLite consensus disorder prediction 1 34 - -
Pvu9g0652 420 Gene3D - 91 171 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0652 Pvu-Chr9 11006045 11012047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0652 94 369 Eukaryotic Initiation Factors Gene Family AT4G34110 28.622 1.22e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0652 9 11006045 11012047 Pvu9g0652 9 11006045 11012047 ECH
Pvu1g0201 1 1679134 1683610 Pvu9g0652 9 11006045 11012047 PCT